Gene : AL7G13880 A. lyrata v2.1

Defline:  (1 of 3) PTHR14237:SF31 - CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING PROTEIN Genomic Order:  374
Name:  ? AL7G13880 Secondary Identifier:  ? PAC:35939785

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-5963 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G13880 0.5kb upstream 0.5kb upstream 3873   true scaffold_7: 1566751-1570623 Arabidopsis lyrata
AL7G13880 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 1570124-1570623 Arabidopsis lyrata
AL7G13880 0.5kb downstream 0.5kb downstream 3873   true scaffold_7: 1566251-1570123 Arabidopsis lyrata
AL7G13880 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 1566251-1566750 Arabidopsis lyrata
AL7G13880 1.0kb upstream 1.0kb upstream 4373   true scaffold_7: 1566751-1571123 Arabidopsis lyrata
AL7G13880 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 1570124-1571123 Arabidopsis lyrata
AL7G13880 1.0kb downstream 1.0kb downstream 4373   true scaffold_7: 1565751-1570123 Arabidopsis lyrata
AL7G13880 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 1565751-1566750 Arabidopsis lyrata
AL7G13880 2.0kb upstream 2.0kb upstream 5373   true scaffold_7: 1566751-1572123 Arabidopsis lyrata
AL7G13880 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 1570124-1572123 Arabidopsis lyrata
AL7G13880 2.0kb downstream 2.0kb downstream 5373   true scaffold_7: 1564751-1570123 Arabidopsis lyrata
AL7G13880 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 1564751-1566750 Arabidopsis lyrata
AL7G13880 5.0kb upstream 5.0kb upstream 8373   true scaffold_7: 1566751-1575123 Arabidopsis lyrata
AL7G13880 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 1570124-1575123 Arabidopsis lyrata
AL7G13880 5.0kb downstream 5.0kb downstream 8373   true scaffold_7: 1561751-1570123 Arabidopsis lyrata
AL7G13880 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 1561751-1566750 Arabidopsis lyrata
AL7G13880 10.0kb upstream 10.0kb upstream 13373   true scaffold_7: 1566751-1580123 Arabidopsis lyrata
AL7G13880 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 1570124-1580123 Arabidopsis lyrata
AL7G13880 10.0kb downstream 10.0kb downstream 13373   true scaffold_7: 1556751-1570123 Arabidopsis lyrata
AL7G13880 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 1556751-1566750 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364523 5261 Brassicaceae View MSA
123798770 5264 Brassicales-Malvales View MSA
124296364 5266 SBM View MSA
124251405 5268 Malvidae View MSA
124071174 5270 Rosid View MSA
123739194 5271 Pentapetalae View MSA
122789460 5272 Eudicot View MSA
122047706 5273 Angiosperm View MSA
121350233 5274 Embryophyte View MSA
123381636 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain