Gene : AL7G39950 A. lyrata v2.1

Defline:  (1 of 3) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2839
Name:  ? AL7G39950 Secondary Identifier:  ? PAC:35939284

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7560 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G39950 0.5kb upstream 0.5kb upstream 4078   true scaffold_7: 12832481-12836558 Arabidopsis lyrata
AL7G39950 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 12836059-12836558 Arabidopsis lyrata
AL7G39950 0.5kb downstream 0.5kb downstream 4078   true scaffold_7: 12831981-12836058 Arabidopsis lyrata
AL7G39950 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 12831981-12832480 Arabidopsis lyrata
AL7G39950 1.0kb upstream 1.0kb upstream 4578   true scaffold_7: 12832481-12837058 Arabidopsis lyrata
AL7G39950 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 12836059-12837058 Arabidopsis lyrata
AL7G39950 1.0kb downstream 1.0kb downstream 4578   true scaffold_7: 12831481-12836058 Arabidopsis lyrata
AL7G39950 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 12831481-12832480 Arabidopsis lyrata
AL7G39950 2.0kb upstream 2.0kb upstream 5578   true scaffold_7: 12832481-12838058 Arabidopsis lyrata
AL7G39950 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 12836059-12838058 Arabidopsis lyrata
AL7G39950 2.0kb downstream 2.0kb downstream 5578   true scaffold_7: 12830481-12836058 Arabidopsis lyrata
AL7G39950 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 12830481-12832480 Arabidopsis lyrata
AL7G39950 5.0kb upstream 5.0kb upstream 8578   true scaffold_7: 12832481-12841058 Arabidopsis lyrata
AL7G39950 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 12836059-12841058 Arabidopsis lyrata
AL7G39950 5.0kb downstream 5.0kb downstream 8578   true scaffold_7: 12827481-12836058 Arabidopsis lyrata
AL7G39950 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 12827481-12832480 Arabidopsis lyrata
AL7G39950 10.0kb upstream 10.0kb upstream 13578   true scaffold_7: 12832481-12846058 Arabidopsis lyrata
AL7G39950 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 12836059-12846058 Arabidopsis lyrata
AL7G39950 10.0kb downstream 10.0kb downstream 13578   true scaffold_7: 12822481-12836058 Arabidopsis lyrata
AL7G39950 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 12822481-12832480 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369320 5261 Brassicaceae View MSA
123830613 5264 Brassicales-Malvales View MSA
124343663 5266 SBM View MSA
124239163 5268 Malvidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain