Gene : AL7G52040 A. lyrata v2.1

Defline:  (1 of 1) 4.2.1.122 - Tryptophan synthase (indole-salvaging) / Tryptophan synthase beta-2 Genomic Order:  3892
Name:  ? AL7G52040 Secondary Identifier:  ? PAC:35938476

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata TRPSYN-PWY Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G52040 0.5kb upstream 0.5kb upstream 3140   true scaffold_7: 23909723-23912862 Arabidopsis lyrata
AL7G52040 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 23912363-23912862 Arabidopsis lyrata
AL7G52040 0.5kb downstream 0.5kb downstream 3140   true scaffold_7: 23909223-23912362 Arabidopsis lyrata
AL7G52040 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 23909223-23909722 Arabidopsis lyrata
AL7G52040 1.0kb upstream 1.0kb upstream 3640   true scaffold_7: 23909723-23913362 Arabidopsis lyrata
AL7G52040 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 23912363-23913362 Arabidopsis lyrata
AL7G52040 1.0kb downstream 1.0kb downstream 3640   true scaffold_7: 23908723-23912362 Arabidopsis lyrata
AL7G52040 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 23908723-23909722 Arabidopsis lyrata
AL7G52040 2.0kb upstream 2.0kb upstream 4640   true scaffold_7: 23909723-23914362 Arabidopsis lyrata
AL7G52040 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 23912363-23914362 Arabidopsis lyrata
AL7G52040 2.0kb downstream 2.0kb downstream 4640   true scaffold_7: 23907723-23912362 Arabidopsis lyrata
AL7G52040 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 23907723-23909722 Arabidopsis lyrata
AL7G52040 5.0kb upstream 5.0kb upstream 7640   true scaffold_7: 23909723-23917362 Arabidopsis lyrata
AL7G52040 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 23912363-23917362 Arabidopsis lyrata
AL7G52040 5.0kb downstream 5.0kb downstream 7640   true scaffold_7: 23904723-23912362 Arabidopsis lyrata
AL7G52040 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 23904723-23909722 Arabidopsis lyrata
AL7G52040 10.0kb upstream 10.0kb upstream 12640   true scaffold_7: 23909723-23922362 Arabidopsis lyrata
AL7G52040 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 23912363-23922362 Arabidopsis lyrata
AL7G52040 10.0kb downstream 10.0kb downstream 12640   true scaffold_7: 23899723-23912362 Arabidopsis lyrata
AL7G52040 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 23899723-23909722 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361584 5261 Brassicaceae View MSA
123840024 5264 Brassicales-Malvales View MSA
124344821 5266 SBM View MSA
124242166 5268 Malvidae View MSA
124065122 5270 Rosid View MSA
123740538 5271 Pentapetalae View MSA
122790993 5272 Eudicot View MSA
122043348 5273 Angiosperm View MSA
121348084 5274 Embryophyte View MSA
123380724 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain