Gene : AL7G46250 A. lyrata v2.1

Defline:  (1 of 8) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Genomic Order:  3369
Name:  ? AL7G46250 Secondary Identifier:  ? PAC:35939517

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-7511 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL7G46250 0.5kb upstream 0.5kb upstream 1923   true scaffold_7: 20390104-20392026 Arabidopsis lyrata
AL7G46250 0.5kb upstream 0.5kb upstream 500   false scaffold_7: 20390104-20390603 Arabidopsis lyrata
AL7G46250 0.5kb downstream 0.5kb downstream 1923   true scaffold_7: 20390604-20392526 Arabidopsis lyrata
AL7G46250 0.5kb downstream 0.5kb downstream 500   false scaffold_7: 20392027-20392526 Arabidopsis lyrata
AL7G46250 1.0kb upstream 1.0kb upstream 2423   true scaffold_7: 20389604-20392026 Arabidopsis lyrata
AL7G46250 1.0kb upstream 1.0kb upstream 1000   false scaffold_7: 20389604-20390603 Arabidopsis lyrata
AL7G46250 1.0kb downstream 1.0kb downstream 2423   true scaffold_7: 20390604-20393026 Arabidopsis lyrata
AL7G46250 1.0kb downstream 1.0kb downstream 1000   false scaffold_7: 20392027-20393026 Arabidopsis lyrata
AL7G46250 2.0kb upstream 2.0kb upstream 3423   true scaffold_7: 20388604-20392026 Arabidopsis lyrata
AL7G46250 2.0kb upstream 2.0kb upstream 2000   false scaffold_7: 20388604-20390603 Arabidopsis lyrata
AL7G46250 2.0kb downstream 2.0kb downstream 3423   true scaffold_7: 20390604-20394026 Arabidopsis lyrata
AL7G46250 2.0kb downstream 2.0kb downstream 2000   false scaffold_7: 20392027-20394026 Arabidopsis lyrata
AL7G46250 5.0kb upstream 5.0kb upstream 6423   true scaffold_7: 20385604-20392026 Arabidopsis lyrata
AL7G46250 5.0kb upstream 5.0kb upstream 5000   false scaffold_7: 20385604-20390603 Arabidopsis lyrata
AL7G46250 5.0kb downstream 5.0kb downstream 6423   true scaffold_7: 20390604-20397026 Arabidopsis lyrata
AL7G46250 5.0kb downstream 5.0kb downstream 5000   false scaffold_7: 20392027-20397026 Arabidopsis lyrata
AL7G46250 10.0kb upstream 10.0kb upstream 11423   true scaffold_7: 20380604-20392026 Arabidopsis lyrata
AL7G46250 10.0kb upstream 10.0kb upstream 10000   false scaffold_7: 20380604-20390603 Arabidopsis lyrata
AL7G46250 10.0kb downstream 10.0kb downstream 11423   true scaffold_7: 20390604-20402026 Arabidopsis lyrata
AL7G46250 10.0kb downstream 10.0kb downstream 10000   false scaffold_7: 20392027-20402026 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374127 5261 Brassicaceae View MSA
123838287 5264 Brassicales-Malvales View MSA
124342273 5266 SBM View MSA
124246000 5268 Malvidae View MSA
124062447 5270 Rosid View MSA
123744256 5271 Pentapetalae View MSA
122789600 5272 Eudicot View MSA
122042359 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain