Gene : AL60U10070 A. lyrata v2.1
Defline:  (1 of 3) PTHR10543:SF26 - 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED3, CHLOROPLASTIC-RELATED Genomic Order:  4
Name:  ? AL60U10070 Secondary Identifier:  ? PAC:35930049
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-695 Arabidopsis lyrata pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL60U10070 0.5kb upstream 0.5kb upstream 2656   true scaffold_60: 43256-45911 Arabidopsis lyrata
AL60U10070 0.5kb upstream 0.5kb upstream 500   false scaffold_60: 45412-45911 Arabidopsis lyrata
AL60U10070 0.5kb downstream 0.5kb downstream 2656   true scaffold_60: 42756-45411 Arabidopsis lyrata
AL60U10070 0.5kb downstream 0.5kb downstream 500   false scaffold_60: 42756-43255 Arabidopsis lyrata
AL60U10070 1.0kb upstream 1.0kb upstream 3156   true scaffold_60: 43256-46411 Arabidopsis lyrata
AL60U10070 1.0kb upstream 1.0kb upstream 1000   false scaffold_60: 45412-46411 Arabidopsis lyrata
AL60U10070 1.0kb downstream 1.0kb downstream 3156   true scaffold_60: 42256-45411 Arabidopsis lyrata
AL60U10070 1.0kb downstream 1.0kb downstream 1000   false scaffold_60: 42256-43255 Arabidopsis lyrata
AL60U10070 2.0kb upstream 2.0kb upstream 4156   true scaffold_60: 43256-47411 Arabidopsis lyrata
AL60U10070 2.0kb upstream 2.0kb upstream 2000   false scaffold_60: 45412-47411 Arabidopsis lyrata
AL60U10070 2.0kb downstream 2.0kb downstream 4156   true scaffold_60: 41256-45411 Arabidopsis lyrata
AL60U10070 2.0kb downstream 2.0kb downstream 2000   false scaffold_60: 41256-43255 Arabidopsis lyrata
AL60U10070 5.0kb upstream 5.0kb upstream 7156   true scaffold_60: 43256-50411 Arabidopsis lyrata
AL60U10070 5.0kb upstream 5.0kb upstream 5000   false scaffold_60: 45412-50411 Arabidopsis lyrata
AL60U10070 5.0kb downstream 5.0kb downstream 7156   true scaffold_60: 38256-45411 Arabidopsis lyrata
AL60U10070 5.0kb downstream 5.0kb downstream 5000   false scaffold_60: 38256-43255 Arabidopsis lyrata
AL60U10070 10.0kb upstream 10.0kb upstream 11425   true scaffold_60: 43256-54680 Arabidopsis lyrata
AL60U10070 10.0kb upstream 10.0kb upstream 9269   false scaffold_60: 45412-54680 Arabidopsis lyrata
AL60U10070 10.0kb downstream 10.0kb downstream 12156   true scaffold_60: 33256-45411 Arabidopsis lyrata
AL60U10070 10.0kb downstream 10.0kb downstream 10000   false scaffold_60: 33256-43255 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366050 5261 Brassicaceae View MSA
123839521 5264 Brassicales-Malvales View MSA
124350973 5266 SBM View MSA
124250838 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain