Gene : AL8G33890 A. lyrata v2.1

Defline:  (1 of 1) 2.3.1.133//2.3.1.99 - Shikimate O-hydroxycinnamoyltransferase // Quinate O-hydroxycinnamoyltransferase / Hydroxycinnamoyl coenzyme A-quinate transferase Genomic Order:  2139
Name:  ? AL8G33890 Secondary Identifier:  ? PAC:35948204

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-361 Arabidopsis lyrata pathologic  
Alyrata PWY-6039 Arabidopsis lyrata pathologic  
Alyrata PWY-6040 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G33890 0.5kb upstream 0.5kb upstream 2633   true scaffold_8: 18355657-18358289 Arabidopsis lyrata
AL8G33890 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 18357790-18358289 Arabidopsis lyrata
AL8G33890 0.5kb downstream 0.5kb downstream 2633   true scaffold_8: 18355157-18357789 Arabidopsis lyrata
AL8G33890 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 18355157-18355656 Arabidopsis lyrata
AL8G33890 1.0kb upstream 1.0kb upstream 3133   true scaffold_8: 18355657-18358789 Arabidopsis lyrata
AL8G33890 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 18357790-18358789 Arabidopsis lyrata
AL8G33890 1.0kb downstream 1.0kb downstream 3133   true scaffold_8: 18354657-18357789 Arabidopsis lyrata
AL8G33890 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 18354657-18355656 Arabidopsis lyrata
AL8G33890 2.0kb upstream 2.0kb upstream 4133   true scaffold_8: 18355657-18359789 Arabidopsis lyrata
AL8G33890 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 18357790-18359789 Arabidopsis lyrata
AL8G33890 2.0kb downstream 2.0kb downstream 4133   true scaffold_8: 18353657-18357789 Arabidopsis lyrata
AL8G33890 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 18353657-18355656 Arabidopsis lyrata
AL8G33890 5.0kb upstream 5.0kb upstream 7133   true scaffold_8: 18355657-18362789 Arabidopsis lyrata
AL8G33890 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 18357790-18362789 Arabidopsis lyrata
AL8G33890 5.0kb downstream 5.0kb downstream 7133   true scaffold_8: 18350657-18357789 Arabidopsis lyrata
AL8G33890 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 18350657-18355656 Arabidopsis lyrata
AL8G33890 10.0kb upstream 10.0kb upstream 12133   true scaffold_8: 18355657-18367789 Arabidopsis lyrata
AL8G33890 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 18357790-18367789 Arabidopsis lyrata
AL8G33890 10.0kb downstream 10.0kb downstream 12133   true scaffold_8: 18345657-18357789 Arabidopsis lyrata
AL8G33890 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 18345657-18355656 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365277 5261 Brassicaceae View MSA
123798922 5264 Brassicales-Malvales View MSA
124296495 5266 SBM View MSA
124250027 5268 Malvidae View MSA
124074856 5270 Rosid View MSA
123753544 5271 Pentapetalae View MSA
122797119 5272 Eudicot View MSA
122051643 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain