Gene : AL8G28080 A. lyrata v2.1

Defline:  (1 of 2) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED Genomic Order:  1590
Name:  ? AL8G28080 Secondary Identifier:  ? PAC:35949823

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G28080 0.5kb upstream 0.5kb upstream 3069   true scaffold_8: 15678158-15681226 Arabidopsis lyrata
AL8G28080 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 15680727-15681226 Arabidopsis lyrata
AL8G28080 0.5kb downstream 0.5kb downstream 3069   true scaffold_8: 15677658-15680726 Arabidopsis lyrata
AL8G28080 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 15677658-15678157 Arabidopsis lyrata
AL8G28080 1.0kb upstream 1.0kb upstream 3569   true scaffold_8: 15678158-15681726 Arabidopsis lyrata
AL8G28080 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 15680727-15681726 Arabidopsis lyrata
AL8G28080 1.0kb downstream 1.0kb downstream 3569   true scaffold_8: 15677158-15680726 Arabidopsis lyrata
AL8G28080 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 15677158-15678157 Arabidopsis lyrata
AL8G28080 2.0kb upstream 2.0kb upstream 4569   true scaffold_8: 15678158-15682726 Arabidopsis lyrata
AL8G28080 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 15680727-15682726 Arabidopsis lyrata
AL8G28080 2.0kb downstream 2.0kb downstream 4569   true scaffold_8: 15676158-15680726 Arabidopsis lyrata
AL8G28080 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 15676158-15678157 Arabidopsis lyrata
AL8G28080 5.0kb upstream 5.0kb upstream 7569   true scaffold_8: 15678158-15685726 Arabidopsis lyrata
AL8G28080 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 15680727-15685726 Arabidopsis lyrata
AL8G28080 5.0kb downstream 5.0kb downstream 7569   true scaffold_8: 15673158-15680726 Arabidopsis lyrata
AL8G28080 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 15673158-15678157 Arabidopsis lyrata
AL8G28080 10.0kb upstream 10.0kb upstream 12569   true scaffold_8: 15678158-15690726 Arabidopsis lyrata
AL8G28080 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 15680727-15690726 Arabidopsis lyrata
AL8G28080 10.0kb downstream 10.0kb downstream 12569   true scaffold_8: 15668158-15680726 Arabidopsis lyrata
AL8G28080 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 15668158-15678157 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377390 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain