Gene : AL8G38400 A. lyrata v2.1

Defline:  (1 of 4) PTHR31321:SF23 - PECTINESTERASE PPME1-RELATED Genomic Order:  2560
Name:  ? AL8G38400 Secondary Identifier:  ? PAC:35949226

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1081 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL8G38400 0.5kb upstream 0.5kb upstream 2331   true scaffold_8: 20134259-20136589 Arabidopsis lyrata
AL8G38400 0.5kb upstream 0.5kb upstream 500   false scaffold_8: 20136090-20136589 Arabidopsis lyrata
AL8G38400 0.5kb downstream 0.5kb downstream 2331   true scaffold_8: 20133759-20136089 Arabidopsis lyrata
AL8G38400 0.5kb downstream 0.5kb downstream 500   false scaffold_8: 20133759-20134258 Arabidopsis lyrata
AL8G38400 1.0kb upstream 1.0kb upstream 2831   true scaffold_8: 20134259-20137089 Arabidopsis lyrata
AL8G38400 1.0kb upstream 1.0kb upstream 1000   false scaffold_8: 20136090-20137089 Arabidopsis lyrata
AL8G38400 1.0kb downstream 1.0kb downstream 2831   true scaffold_8: 20133259-20136089 Arabidopsis lyrata
AL8G38400 1.0kb downstream 1.0kb downstream 1000   false scaffold_8: 20133259-20134258 Arabidopsis lyrata
AL8G38400 2.0kb upstream 2.0kb upstream 3831   true scaffold_8: 20134259-20138089 Arabidopsis lyrata
AL8G38400 2.0kb upstream 2.0kb upstream 2000   false scaffold_8: 20136090-20138089 Arabidopsis lyrata
AL8G38400 2.0kb downstream 2.0kb downstream 3831   true scaffold_8: 20132259-20136089 Arabidopsis lyrata
AL8G38400 2.0kb downstream 2.0kb downstream 2000   false scaffold_8: 20132259-20134258 Arabidopsis lyrata
AL8G38400 5.0kb upstream 5.0kb upstream 6831   true scaffold_8: 20134259-20141089 Arabidopsis lyrata
AL8G38400 5.0kb upstream 5.0kb upstream 5000   false scaffold_8: 20136090-20141089 Arabidopsis lyrata
AL8G38400 5.0kb downstream 5.0kb downstream 6831   true scaffold_8: 20129259-20136089 Arabidopsis lyrata
AL8G38400 5.0kb downstream 5.0kb downstream 5000   false scaffold_8: 20129259-20134258 Arabidopsis lyrata
AL8G38400 10.0kb upstream 10.0kb upstream 11831   true scaffold_8: 20134259-20146089 Arabidopsis lyrata
AL8G38400 10.0kb upstream 10.0kb upstream 10000   false scaffold_8: 20136090-20146089 Arabidopsis lyrata
AL8G38400 10.0kb downstream 10.0kb downstream 11831   true scaffold_8: 20124259-20136089 Arabidopsis lyrata
AL8G38400 10.0kb downstream 10.0kb downstream 10000   false scaffold_8: 20124259-20134258 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371294 5261 Brassicaceae View MSA
123836646 5264 Brassicales-Malvales View MSA
124350112 5266 SBM View MSA
124253324 5268 Malvidae View MSA
124071696 5270 Rosid View MSA
123740013 5271 Pentapetalae View MSA
122792940 5272 Eudicot View MSA
122051382 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain