Gene : AL1G15490 A. lyrata v2.1

Defline:  (1 of 1) PTHR22600:SF0 - BETA-HEXOSAMINIDASE Genomic Order:  529
Name:  ? AL1G15490 Secondary Identifier:  ? PAC:35933571

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-6902 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G15490 0.5kb upstream 0.5kb upstream 3034   true scaffold_1: 2000068-2003101 Arabidopsis lyrata
AL1G15490 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 2000068-2000567 Arabidopsis lyrata
AL1G15490 0.5kb downstream 0.5kb downstream 3034   true scaffold_1: 2000568-2003601 Arabidopsis lyrata
AL1G15490 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 2003102-2003601 Arabidopsis lyrata
AL1G15490 1.0kb upstream 1.0kb upstream 3534   true scaffold_1: 1999568-2003101 Arabidopsis lyrata
AL1G15490 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 1999568-2000567 Arabidopsis lyrata
AL1G15490 1.0kb downstream 1.0kb downstream 3534   true scaffold_1: 2000568-2004101 Arabidopsis lyrata
AL1G15490 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 2003102-2004101 Arabidopsis lyrata
AL1G15490 2.0kb upstream 2.0kb upstream 4534   true scaffold_1: 1998568-2003101 Arabidopsis lyrata
AL1G15490 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 1998568-2000567 Arabidopsis lyrata
AL1G15490 2.0kb downstream 2.0kb downstream 4534   true scaffold_1: 2000568-2005101 Arabidopsis lyrata
AL1G15490 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 2003102-2005101 Arabidopsis lyrata
AL1G15490 5.0kb upstream 5.0kb upstream 7534   true scaffold_1: 1995568-2003101 Arabidopsis lyrata
AL1G15490 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 1995568-2000567 Arabidopsis lyrata
AL1G15490 5.0kb downstream 5.0kb downstream 7534   true scaffold_1: 2000568-2008101 Arabidopsis lyrata
AL1G15490 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 2003102-2008101 Arabidopsis lyrata
AL1G15490 10.0kb upstream 10.0kb upstream 12534   true scaffold_1: 1990568-2003101 Arabidopsis lyrata
AL1G15490 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 1990568-2000567 Arabidopsis lyrata
AL1G15490 10.0kb downstream 10.0kb downstream 12534   true scaffold_1: 2000568-2013101 Arabidopsis lyrata
AL1G15490 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 2003102-2013101 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361529 5261 Brassicaceae View MSA
123831341 5264 Brassicales-Malvales View MSA
124339325 5266 SBM View MSA
124240039 5268 Malvidae View MSA
124063455 5270 Rosid View MSA
123738859 5271 Pentapetalae View MSA
122789804 5272 Eudicot View MSA
122047899 5273 Angiosperm View MSA
121347698 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain