Gene : AL1G13890 A. lyrata v2.1

Defline:  (1 of 1) PTHR21660:SF6 - F19P19.27 PROTEIN Genomic Order:  373
Name:  ? AL1G13890 Secondary Identifier:  ? PAC:35931570

Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1121 Arabidopsis lyrata pathologic  
Alyrata PWY-321 Arabidopsis lyrata pathologic  
Alyrata PWY-5148 Arabidopsis lyrata pathologic  
Alyrata PWY-6733 Arabidopsis lyrata pathologic  
Alyrata PWY-735 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G13890 0.5kb upstream 0.5kb upstream 1318   true scaffold_1: 1392060-1393377 Arabidopsis lyrata
AL1G13890 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 1392878-1393377 Arabidopsis lyrata
AL1G13890 0.5kb downstream 0.5kb downstream 1318   true scaffold_1: 1391560-1392877 Arabidopsis lyrata
AL1G13890 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 1391560-1392059 Arabidopsis lyrata
AL1G13890 1.0kb upstream 1.0kb upstream 1818   true scaffold_1: 1392060-1393877 Arabidopsis lyrata
AL1G13890 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 1392878-1393877 Arabidopsis lyrata
AL1G13890 1.0kb downstream 1.0kb downstream 1818   true scaffold_1: 1391060-1392877 Arabidopsis lyrata
AL1G13890 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 1391060-1392059 Arabidopsis lyrata
AL1G13890 2.0kb upstream 2.0kb upstream 2818   true scaffold_1: 1392060-1394877 Arabidopsis lyrata
AL1G13890 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 1392878-1394877 Arabidopsis lyrata
AL1G13890 2.0kb downstream 2.0kb downstream 2818   true scaffold_1: 1390060-1392877 Arabidopsis lyrata
AL1G13890 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 1390060-1392059 Arabidopsis lyrata
AL1G13890 5.0kb upstream 5.0kb upstream 5818   true scaffold_1: 1392060-1397877 Arabidopsis lyrata
AL1G13890 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 1392878-1397877 Arabidopsis lyrata
AL1G13890 5.0kb downstream 5.0kb downstream 5818   true scaffold_1: 1387060-1392877 Arabidopsis lyrata
AL1G13890 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 1387060-1392059 Arabidopsis lyrata
AL1G13890 10.0kb upstream 10.0kb upstream 10818   true scaffold_1: 1392060-1402877 Arabidopsis lyrata
AL1G13890 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 1392878-1402877 Arabidopsis lyrata
AL1G13890 10.0kb downstream 10.0kb downstream 10818   true scaffold_1: 1382060-1392877 Arabidopsis lyrata
AL1G13890 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 1382060-1392059 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368496 5261 Brassicaceae View MSA
123835982 5264 Brassicales-Malvales View MSA
124345518 5266 SBM View MSA
124241074 5268 Malvidae View MSA
124063783 5270 Rosid View MSA
123750481 5271 Pentapetalae View MSA
122787184 5272 Eudicot View MSA
122043705 5273 Angiosperm View MSA
121345326 5274 Embryophyte View MSA
123428627 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain