Gene : AL1G28460 A. lyrata v2.1

Defline:  (1 of 2) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  1763
Name:  ? AL1G28460 Secondary Identifier:  ? PAC:35933734

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Alyrata PWY-1269 Arabidopsis lyrata pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AL1G28460 0.5kb upstream 0.5kb upstream 3026   true scaffold_1: 6852596-6855621 Arabidopsis lyrata
AL1G28460 0.5kb upstream 0.5kb upstream 500   false scaffold_1: 6855122-6855621 Arabidopsis lyrata
AL1G28460 0.5kb downstream 0.5kb downstream 3026   true scaffold_1: 6852096-6855121 Arabidopsis lyrata
AL1G28460 0.5kb downstream 0.5kb downstream 500   false scaffold_1: 6852096-6852595 Arabidopsis lyrata
AL1G28460 1.0kb upstream 1.0kb upstream 3526   true scaffold_1: 6852596-6856121 Arabidopsis lyrata
AL1G28460 1.0kb upstream 1.0kb upstream 1000   false scaffold_1: 6855122-6856121 Arabidopsis lyrata
AL1G28460 1.0kb downstream 1.0kb downstream 3526   true scaffold_1: 6851596-6855121 Arabidopsis lyrata
AL1G28460 1.0kb downstream 1.0kb downstream 1000   false scaffold_1: 6851596-6852595 Arabidopsis lyrata
AL1G28460 2.0kb upstream 2.0kb upstream 4526   true scaffold_1: 6852596-6857121 Arabidopsis lyrata
AL1G28460 2.0kb upstream 2.0kb upstream 2000   false scaffold_1: 6855122-6857121 Arabidopsis lyrata
AL1G28460 2.0kb downstream 2.0kb downstream 4526   true scaffold_1: 6850596-6855121 Arabidopsis lyrata
AL1G28460 2.0kb downstream 2.0kb downstream 2000   false scaffold_1: 6850596-6852595 Arabidopsis lyrata
AL1G28460 5.0kb upstream 5.0kb upstream 7526   true scaffold_1: 6852596-6860121 Arabidopsis lyrata
AL1G28460 5.0kb upstream 5.0kb upstream 5000   false scaffold_1: 6855122-6860121 Arabidopsis lyrata
AL1G28460 5.0kb downstream 5.0kb downstream 7526   true scaffold_1: 6847596-6855121 Arabidopsis lyrata
AL1G28460 5.0kb downstream 5.0kb downstream 5000   false scaffold_1: 6847596-6852595 Arabidopsis lyrata
AL1G28460 10.0kb upstream 10.0kb upstream 12526   true scaffold_1: 6852596-6865121 Arabidopsis lyrata
AL1G28460 10.0kb upstream 10.0kb upstream 10000   false scaffold_1: 6855122-6865121 Arabidopsis lyrata
AL1G28460 10.0kb downstream 10.0kb downstream 12526   true scaffold_1: 6842596-6855121 Arabidopsis lyrata
AL1G28460 10.0kb downstream 10.0kb downstream 10000   false scaffold_1: 6842596-6852595 Arabidopsis lyrata

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379396 5261 Brassicaceae View MSA
123829711 5264 Brassicales-Malvales View MSA
124345040 5266 SBM View MSA
124244021 5268 Malvidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain