Gene : Tp57577_TGAC_v2_gene38784 T. pratense v2
Defline:  (1 of 8) K01904 - 4-coumarate--CoA ligase (4CL) Genomic Order:  2767
Name:  ? Tp57577_TGAC_v2_gene38784 Secondary Identifier:  ? PAC:35964698
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1121 Trifolium pratense pathologic  
Tpratense PWY1F-FLAVSYN Trifolium pratense pathologic  
Tpratense PWY-361 Trifolium pratense pathologic  
Tpratense PWY-6435 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene38784 0.5kb upstream 0.5kb upstream 6045 true Tp57577_TGAC_v2_LG4: 25680023-25686067 Trifolium pratense
Tp57577_TGAC_v2_gene38784 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG4: 25685568-25686067 Trifolium pratense
Tp57577_TGAC_v2_gene38784 0.5kb downstream 0.5kb downstream 6045 true Tp57577_TGAC_v2_LG4: 25679523-25685567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG4: 25679523-25680022 Trifolium pratense
Tp57577_TGAC_v2_gene38784 1.0kb upstream 1.0kb upstream 6545 true Tp57577_TGAC_v2_LG4: 25680023-25686567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG4: 25685568-25686567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 1.0kb downstream 1.0kb downstream 6545 true Tp57577_TGAC_v2_LG4: 25679023-25685567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG4: 25679023-25680022 Trifolium pratense
Tp57577_TGAC_v2_gene38784 2.0kb upstream 2.0kb upstream 7545 true Tp57577_TGAC_v2_LG4: 25680023-25687567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG4: 25685568-25687567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 2.0kb downstream 2.0kb downstream 7545 true Tp57577_TGAC_v2_LG4: 25678023-25685567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG4: 25678023-25680022 Trifolium pratense
Tp57577_TGAC_v2_gene38784 5.0kb upstream 5.0kb upstream 10545 true Tp57577_TGAC_v2_LG4: 25680023-25690567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG4: 25685568-25690567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 5.0kb downstream 5.0kb downstream 10545 true Tp57577_TGAC_v2_LG4: 25675023-25685567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG4: 25675023-25680022 Trifolium pratense
Tp57577_TGAC_v2_gene38784 10.0kb upstream 10.0kb upstream 15545 true Tp57577_TGAC_v2_LG4: 25680023-25695567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG4: 25685568-25695567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 10.0kb downstream 10.0kb downstream 15545 true Tp57577_TGAC_v2_LG4: 25670023-25685567 Trifolium pratense
Tp57577_TGAC_v2_gene38784 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG4: 25670023-25680022 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300508 5265 Fabidae View MSA
124064969 5270 Rosid View MSA
123741286 5271 Pentapetalae View MSA
122790673 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain