Gene : Tp57577_TGAC_v2_gene4988 T. pratense v2
Defline:  (1 of 3) PF02095 - Extensin-like protein repeat (Extensin_1) Genomic Order:  3156
Name:  ? Tp57577_TGAC_v2_gene4988 Secondary Identifier:  ? PAC:35966529
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene4988 0.5kb upstream 0.5kb upstream 1781 true Tp57577_TGAC_v2_LG4: 28809043-28810823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG4: 28809043-28809542 Trifolium pratense
Tp57577_TGAC_v2_gene4988 0.5kb downstream 0.5kb downstream 1781 true Tp57577_TGAC_v2_LG4: 28809543-28811323 Trifolium pratense
Tp57577_TGAC_v2_gene4988 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG4: 28810824-28811323 Trifolium pratense
Tp57577_TGAC_v2_gene4988 1.0kb upstream 1.0kb upstream 2281 true Tp57577_TGAC_v2_LG4: 28808543-28810823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG4: 28808543-28809542 Trifolium pratense
Tp57577_TGAC_v2_gene4988 1.0kb downstream 1.0kb downstream 2281 true Tp57577_TGAC_v2_LG4: 28809543-28811823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG4: 28810824-28811823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 2.0kb upstream 2.0kb upstream 3281 true Tp57577_TGAC_v2_LG4: 28807543-28810823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG4: 28807543-28809542 Trifolium pratense
Tp57577_TGAC_v2_gene4988 2.0kb downstream 2.0kb downstream 3281 true Tp57577_TGAC_v2_LG4: 28809543-28812823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG4: 28810824-28812823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 5.0kb upstream 5.0kb upstream 6281 true Tp57577_TGAC_v2_LG4: 28804543-28810823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG4: 28804543-28809542 Trifolium pratense
Tp57577_TGAC_v2_gene4988 5.0kb downstream 5.0kb downstream 6281 true Tp57577_TGAC_v2_LG4: 28809543-28815823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG4: 28810824-28815823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 10.0kb upstream 10.0kb upstream 11281 true Tp57577_TGAC_v2_LG4: 28799543-28810823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG4: 28799543-28809542 Trifolium pratense
Tp57577_TGAC_v2_gene4988 10.0kb downstream 10.0kb downstream 11281 true Tp57577_TGAC_v2_LG4: 28809543-28820823 Trifolium pratense
Tp57577_TGAC_v2_gene4988 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG4: 28810824-28820823 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121639013 5273 Angiosperm Singleton cluster - no MSA
122277915 5265 Fabidae Singleton cluster - no MSA
124018437 5270 Rosid Singleton cluster - no MSA
123592277 5271 Pentapetalae Singleton cluster - no MSA
122626968 5272 Eudicot Singleton cluster - no MSA
120911117 5274 Embryophyte Singleton cluster - no MSA
122951766 5275 Viridiplantae Singleton cluster - no MSA

0 Rna Seq Expressions

0 Strain