Gene : Tp57577_TGAC_v2_gene13551 T. pratense v2
Defline:  (1 of 8) K13065 - shikimate O-hydroxycinnamoyltransferase (E2.3.1.133, HCT) Genomic Order:  1481
Name:  ? Tp57577_TGAC_v2_gene13551 Secondary Identifier:  ? PAC:35983378
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-361 Trifolium pratense pathologic  
Tpratense PWY-6040 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene13551 0.5kb upstream 0.5kb upstream 2280 true Tp57577_TGAC_v2_LG5: 14332334-14334613 Trifolium pratense
Tp57577_TGAC_v2_gene13551 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 14334114-14334613 Trifolium pratense
Tp57577_TGAC_v2_gene13551 0.5kb downstream 0.5kb downstream 2280 true Tp57577_TGAC_v2_LG5: 14331834-14334113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 14331834-14332333 Trifolium pratense
Tp57577_TGAC_v2_gene13551 1.0kb upstream 1.0kb upstream 2780 true Tp57577_TGAC_v2_LG5: 14332334-14335113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 14334114-14335113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 1.0kb downstream 1.0kb downstream 2780 true Tp57577_TGAC_v2_LG5: 14331334-14334113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 14331334-14332333 Trifolium pratense
Tp57577_TGAC_v2_gene13551 2.0kb upstream 2.0kb upstream 3780 true Tp57577_TGAC_v2_LG5: 14332334-14336113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 14334114-14336113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 2.0kb downstream 2.0kb downstream 3780 true Tp57577_TGAC_v2_LG5: 14330334-14334113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 14330334-14332333 Trifolium pratense
Tp57577_TGAC_v2_gene13551 5.0kb upstream 5.0kb upstream 6780 true Tp57577_TGAC_v2_LG5: 14332334-14339113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 14334114-14339113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 5.0kb downstream 5.0kb downstream 6780 true Tp57577_TGAC_v2_LG5: 14327334-14334113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 14327334-14332333 Trifolium pratense
Tp57577_TGAC_v2_gene13551 10.0kb upstream 10.0kb upstream 11780 true Tp57577_TGAC_v2_LG5: 14332334-14344113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 14334114-14344113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 10.0kb downstream 10.0kb downstream 11780 true Tp57577_TGAC_v2_LG5: 14322334-14334113 Trifolium pratense
Tp57577_TGAC_v2_gene13551 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 14322334-14332333 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121792312 5273 Angiosperm View MSA
122298352 5265 Fabidae View MSA
124036429 5270 Rosid View MSA
123609777 5271 Pentapetalae View MSA
122797299 5272 Eudicot View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain