Gene : Tp57577_TGAC_v2_gene17347 T. pratense v2
Defline:  (1 of 96) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1394
Name:  ? Tp57577_TGAC_v2_gene17347 Secondary Identifier:  ? PAC:35984674
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene17347 0.5kb upstream 0.5kb upstream 3812 true Tp57577_TGAC_v2_LG5: 13489348-13493159 Trifolium pratense
Tp57577_TGAC_v2_gene17347 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG5: 13492660-13493159 Trifolium pratense
Tp57577_TGAC_v2_gene17347 0.5kb downstream 0.5kb downstream 3812 true Tp57577_TGAC_v2_LG5: 13488848-13492659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG5: 13488848-13489347 Trifolium pratense
Tp57577_TGAC_v2_gene17347 1.0kb upstream 1.0kb upstream 4312 true Tp57577_TGAC_v2_LG5: 13489348-13493659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG5: 13492660-13493659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 1.0kb downstream 1.0kb downstream 4312 true Tp57577_TGAC_v2_LG5: 13488348-13492659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG5: 13488348-13489347 Trifolium pratense
Tp57577_TGAC_v2_gene17347 2.0kb upstream 2.0kb upstream 5312 true Tp57577_TGAC_v2_LG5: 13489348-13494659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG5: 13492660-13494659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 2.0kb downstream 2.0kb downstream 5312 true Tp57577_TGAC_v2_LG5: 13487348-13492659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG5: 13487348-13489347 Trifolium pratense
Tp57577_TGAC_v2_gene17347 5.0kb upstream 5.0kb upstream 8312 true Tp57577_TGAC_v2_LG5: 13489348-13497659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG5: 13492660-13497659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 5.0kb downstream 5.0kb downstream 8312 true Tp57577_TGAC_v2_LG5: 13484348-13492659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG5: 13484348-13489347 Trifolium pratense
Tp57577_TGAC_v2_gene17347 10.0kb upstream 10.0kb upstream 13312 true Tp57577_TGAC_v2_LG5: 13489348-13502659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG5: 13492660-13502659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 10.0kb downstream 10.0kb downstream 13312 true Tp57577_TGAC_v2_LG5: 13479348-13492659 Trifolium pratense
Tp57577_TGAC_v2_gene17347 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG5: 13479348-13489347 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297857 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain