Gene : Tp57577_TGAC_v2_gene4813 T. pratense v2
Defline:  (1 of 2) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  18
Name:  ? Tp57577_TGAC_v2_gene4813 Secondary Identifier:  ? PAC:35976075
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6689 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene4813 0.5kb upstream 0.5kb upstream 2989 true Tp57577_TGAC_v2_LG6: 118255-121243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG6: 118255-118754 Trifolium pratense
Tp57577_TGAC_v2_gene4813 0.5kb downstream 0.5kb downstream 2989 true Tp57577_TGAC_v2_LG6: 118755-121743 Trifolium pratense
Tp57577_TGAC_v2_gene4813 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG6: 121244-121743 Trifolium pratense
Tp57577_TGAC_v2_gene4813 1.0kb upstream 1.0kb upstream 3489 true Tp57577_TGAC_v2_LG6: 117755-121243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG6: 117755-118754 Trifolium pratense
Tp57577_TGAC_v2_gene4813 1.0kb downstream 1.0kb downstream 3489 true Tp57577_TGAC_v2_LG6: 118755-122243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG6: 121244-122243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 2.0kb upstream 2.0kb upstream 4489 true Tp57577_TGAC_v2_LG6: 116755-121243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG6: 116755-118754 Trifolium pratense
Tp57577_TGAC_v2_gene4813 2.0kb downstream 2.0kb downstream 4489 true Tp57577_TGAC_v2_LG6: 118755-123243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG6: 121244-123243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 5.0kb upstream 5.0kb upstream 7489 true Tp57577_TGAC_v2_LG6: 113755-121243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG6: 113755-118754 Trifolium pratense
Tp57577_TGAC_v2_gene4813 5.0kb downstream 5.0kb downstream 7489 true Tp57577_TGAC_v2_LG6: 118755-126243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG6: 121244-126243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 10.0kb upstream 10.0kb upstream 12489 true Tp57577_TGAC_v2_LG6: 108755-121243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG6: 108755-118754 Trifolium pratense
Tp57577_TGAC_v2_gene4813 10.0kb downstream 10.0kb downstream 12489 true Tp57577_TGAC_v2_LG6: 118755-131243 Trifolium pratense
Tp57577_TGAC_v2_gene4813 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG6: 121244-131243 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122306771 5265 Fabidae View MSA
124064519 5270 Rosid View MSA
123739625 5271 Pentapetalae View MSA
122788641 5272 Eudicot View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain