Gene : Tp57577_TGAC_v2_gene12443 T. pratense v2
Defline:  (1 of 41) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  1219
Name:  ? Tp57577_TGAC_v2_gene12443 Secondary Identifier:  ? PAC:35956542
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene12443 0.5kb upstream 0.5kb upstream 2215 true Tp57577_TGAC_v2_LG7: 9593902-9596116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 9593902-9594401 Trifolium pratense
Tp57577_TGAC_v2_gene12443 0.5kb downstream 0.5kb downstream 2215 true Tp57577_TGAC_v2_LG7: 9594402-9596616 Trifolium pratense
Tp57577_TGAC_v2_gene12443 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 9596117-9596616 Trifolium pratense
Tp57577_TGAC_v2_gene12443 1.0kb upstream 1.0kb upstream 2715 true Tp57577_TGAC_v2_LG7: 9593402-9596116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 9593402-9594401 Trifolium pratense
Tp57577_TGAC_v2_gene12443 1.0kb downstream 1.0kb downstream 2715 true Tp57577_TGAC_v2_LG7: 9594402-9597116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 9596117-9597116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 2.0kb upstream 2.0kb upstream 3715 true Tp57577_TGAC_v2_LG7: 9592402-9596116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 9592402-9594401 Trifolium pratense
Tp57577_TGAC_v2_gene12443 2.0kb downstream 2.0kb downstream 3715 true Tp57577_TGAC_v2_LG7: 9594402-9598116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 9596117-9598116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 5.0kb upstream 5.0kb upstream 6715 true Tp57577_TGAC_v2_LG7: 9589402-9596116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 9589402-9594401 Trifolium pratense
Tp57577_TGAC_v2_gene12443 5.0kb downstream 5.0kb downstream 6715 true Tp57577_TGAC_v2_LG7: 9594402-9601116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 9596117-9601116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 10.0kb upstream 10.0kb upstream 11715 true Tp57577_TGAC_v2_LG7: 9584402-9596116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 9584402-9594401 Trifolium pratense
Tp57577_TGAC_v2_gene12443 10.0kb downstream 10.0kb downstream 11715 true Tp57577_TGAC_v2_LG7: 9594402-9606116 Trifolium pratense
Tp57577_TGAC_v2_gene12443 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 9596117-9606116 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122032232 5273 Angiosperm View MSA
122308309 5265 Fabidae View MSA
124070759 5270 Rosid View MSA
123743197 5271 Pentapetalae View MSA
122770561 5272 Eudicot View MSA
121301155 5274 Embryophyte View MSA
123338836 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain