Gene : Tp57577_TGAC_v2_gene4480 T. pratense v2
Defline:  (1 of 1) PTHR31843:SF2 - ALLENE OXIDE CYCLASE 1, CHLOROPLASTIC-RELATED Genomic Order:  434
Name:  ? Tp57577_TGAC_v2_gene4480 Secondary Identifier:  ? PAC:35958235
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-735 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene4480 0.5kb upstream 0.5kb upstream 1909 true Tp57577_TGAC_v2_LG7: 3407677-3409585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 3407677-3408176 Trifolium pratense
Tp57577_TGAC_v2_gene4480 0.5kb downstream 0.5kb downstream 1909 true Tp57577_TGAC_v2_LG7: 3408177-3410085 Trifolium pratense
Tp57577_TGAC_v2_gene4480 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 3409586-3410085 Trifolium pratense
Tp57577_TGAC_v2_gene4480 1.0kb upstream 1.0kb upstream 2409 true Tp57577_TGAC_v2_LG7: 3407177-3409585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 3407177-3408176 Trifolium pratense
Tp57577_TGAC_v2_gene4480 1.0kb downstream 1.0kb downstream 2409 true Tp57577_TGAC_v2_LG7: 3408177-3410585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 3409586-3410585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 2.0kb upstream 2.0kb upstream 3409 true Tp57577_TGAC_v2_LG7: 3406177-3409585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 3406177-3408176 Trifolium pratense
Tp57577_TGAC_v2_gene4480 2.0kb downstream 2.0kb downstream 3409 true Tp57577_TGAC_v2_LG7: 3408177-3411585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 3409586-3411585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 5.0kb upstream 5.0kb upstream 6409 true Tp57577_TGAC_v2_LG7: 3403177-3409585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 3403177-3408176 Trifolium pratense
Tp57577_TGAC_v2_gene4480 5.0kb downstream 5.0kb downstream 6409 true Tp57577_TGAC_v2_LG7: 3408177-3414585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 3409586-3414585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 10.0kb upstream 10.0kb upstream 11409 true Tp57577_TGAC_v2_LG7: 3398177-3409585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 3398177-3408176 Trifolium pratense
Tp57577_TGAC_v2_gene4480 10.0kb downstream 10.0kb downstream 11409 true Tp57577_TGAC_v2_LG7: 3408177-3419585 Trifolium pratense
Tp57577_TGAC_v2_gene4480 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 3409586-3419585 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain