Gene : Tp57577_TGAC_v2_gene4499 T. pratense v2
Defline:  (1 of 2) K14593 - capsanthin/capsorubin synthase (CCS1) Genomic Order:  454
Name:  ? Tp57577_TGAC_v2_gene4499 Secondary Identifier:  ? PAC:35955423
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-6809 Trifolium pratense pathologic  
Tpratense PWY-695 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene4499 0.5kb upstream 0.5kb upstream 2416 true Tp57577_TGAC_v2_LG7: 3547951-3550366 Trifolium pratense
Tp57577_TGAC_v2_gene4499 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG7: 3549867-3550366 Trifolium pratense
Tp57577_TGAC_v2_gene4499 0.5kb downstream 0.5kb downstream 2416 true Tp57577_TGAC_v2_LG7: 3547451-3549866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG7: 3547451-3547950 Trifolium pratense
Tp57577_TGAC_v2_gene4499 1.0kb upstream 1.0kb upstream 2916 true Tp57577_TGAC_v2_LG7: 3547951-3550866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG7: 3549867-3550866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 1.0kb downstream 1.0kb downstream 2916 true Tp57577_TGAC_v2_LG7: 3546951-3549866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG7: 3546951-3547950 Trifolium pratense
Tp57577_TGAC_v2_gene4499 2.0kb upstream 2.0kb upstream 3916 true Tp57577_TGAC_v2_LG7: 3547951-3551866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG7: 3549867-3551866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 2.0kb downstream 2.0kb downstream 3916 true Tp57577_TGAC_v2_LG7: 3545951-3549866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG7: 3545951-3547950 Trifolium pratense
Tp57577_TGAC_v2_gene4499 5.0kb upstream 5.0kb upstream 6916 true Tp57577_TGAC_v2_LG7: 3547951-3554866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG7: 3549867-3554866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 5.0kb downstream 5.0kb downstream 6916 true Tp57577_TGAC_v2_LG7: 3542951-3549866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG7: 3542951-3547950 Trifolium pratense
Tp57577_TGAC_v2_gene4499 10.0kb upstream 10.0kb upstream 11916 true Tp57577_TGAC_v2_LG7: 3547951-3559866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG7: 3549867-3559866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 10.0kb downstream 10.0kb downstream 11916 true Tp57577_TGAC_v2_LG7: 3537951-3549866 Trifolium pratense
Tp57577_TGAC_v2_gene4499 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG7: 3537951-3547950 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308924 5265 Fabidae View MSA
124070716 5270 Rosid View MSA
123749598 5271 Pentapetalae View MSA
122795342 5272 Eudicot View MSA
122048987 5273 Angiosperm View MSA
121311196 5274 Embryophyte View MSA
123348524 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain