Gene : Tp57577_TGAC_v2_gene27381 T. pratense v2
Defline:  (1 of 71) PF14244 - gag-polypeptide of LTR copia-type (UBN2_3) Genomic Order:  3
Name:  ? Tp57577_TGAC_v2_gene27381 Secondary Identifier:  ? PAC:35953551
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene27381 0.5kb upstream 0.5kb upstream 1191 true Tp57577_TGAC_v2_scaf_1063: 15096-16286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_1063: 15096-15595 Trifolium pratense
Tp57577_TGAC_v2_gene27381 0.5kb downstream 0.5kb downstream 1191 true Tp57577_TGAC_v2_scaf_1063: 15596-16786 Trifolium pratense
Tp57577_TGAC_v2_gene27381 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_1063: 16287-16786 Trifolium pratense
Tp57577_TGAC_v2_gene27381 1.0kb upstream 1.0kb upstream 1691 true Tp57577_TGAC_v2_scaf_1063: 14596-16286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_1063: 14596-15595 Trifolium pratense
Tp57577_TGAC_v2_gene27381 1.0kb downstream 1.0kb downstream 1691 true Tp57577_TGAC_v2_scaf_1063: 15596-17286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_1063: 16287-17286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 2.0kb upstream 2.0kb upstream 2691 true Tp57577_TGAC_v2_scaf_1063: 13596-16286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_1063: 13596-15595 Trifolium pratense
Tp57577_TGAC_v2_gene27381 2.0kb downstream 2.0kb downstream 2691 true Tp57577_TGAC_v2_scaf_1063: 15596-18286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_1063: 16287-18286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 5.0kb upstream 5.0kb upstream 5691 true Tp57577_TGAC_v2_scaf_1063: 10596-16286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_1063: 10596-15595 Trifolium pratense
Tp57577_TGAC_v2_gene27381 5.0kb downstream 5.0kb downstream 5691 true Tp57577_TGAC_v2_scaf_1063: 15596-21286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_1063: 16287-21286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 10.0kb upstream 10.0kb upstream 10691 true Tp57577_TGAC_v2_scaf_1063: 5596-16286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_1063: 5596-15595 Trifolium pratense
Tp57577_TGAC_v2_gene27381 10.0kb downstream 10.0kb downstream 10691 true Tp57577_TGAC_v2_scaf_1063: 15596-26286 Trifolium pratense
Tp57577_TGAC_v2_gene27381 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_1063: 16287-26286 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298158 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain