Gene : Tp57577_TGAC_v2_gene19320 T. pratense v2
Defline:  (1 of 3) K02291 - phytoene synthase (crtB) Genomic Order:  21
Name:  ? Tp57577_TGAC_v2_gene19320 Secondary Identifier:  ? PAC:35953219
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense CAROTENOID-PWY Trifolium pratense pathologic  
Tpratense PWY-6475 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene19320 0.5kb upstream 0.5kb upstream 2970 true Tp57577_TGAC_v2_scaf_333: 243396-246365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_333: 243396-243895 Trifolium pratense
Tp57577_TGAC_v2_gene19320 0.5kb downstream 0.5kb downstream 2970 true Tp57577_TGAC_v2_scaf_333: 243896-246865 Trifolium pratense
Tp57577_TGAC_v2_gene19320 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_333: 246366-246865 Trifolium pratense
Tp57577_TGAC_v2_gene19320 1.0kb upstream 1.0kb upstream 3470 true Tp57577_TGAC_v2_scaf_333: 242896-246365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_333: 242896-243895 Trifolium pratense
Tp57577_TGAC_v2_gene19320 1.0kb downstream 1.0kb downstream 3470 true Tp57577_TGAC_v2_scaf_333: 243896-247365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_333: 246366-247365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 2.0kb upstream 2.0kb upstream 4470 true Tp57577_TGAC_v2_scaf_333: 241896-246365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_333: 241896-243895 Trifolium pratense
Tp57577_TGAC_v2_gene19320 2.0kb downstream 2.0kb downstream 4470 true Tp57577_TGAC_v2_scaf_333: 243896-248365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_333: 246366-248365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 5.0kb upstream 5.0kb upstream 7470 true Tp57577_TGAC_v2_scaf_333: 238896-246365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_333: 238896-243895 Trifolium pratense
Tp57577_TGAC_v2_gene19320 5.0kb downstream 5.0kb downstream 7470 true Tp57577_TGAC_v2_scaf_333: 243896-251365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_333: 246366-251365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 10.0kb upstream 10.0kb upstream 12470 true Tp57577_TGAC_v2_scaf_333: 233896-246365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_333: 233896-243895 Trifolium pratense
Tp57577_TGAC_v2_gene19320 10.0kb downstream 10.0kb downstream 12470 true Tp57577_TGAC_v2_scaf_333: 243896-256365 Trifolium pratense
Tp57577_TGAC_v2_gene19320 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_333: 246366-256365 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
122301040 5265 Fabidae View MSA
124070779 5270 Rosid View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain