Gene : Tp57577_TGAC_v2_gene9404 T. pratense v2
Defline:  (1 of 1) 2.1.1.191 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase / rRNA large subunit methyltransferase I Genomic Order:  28
Name:  ? Tp57577_TGAC_v2_gene9404 Secondary Identifier:  ? PAC:35960260
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene9404 0.5kb upstream 0.5kb upstream 7263 true Tp57577_TGAC_v2_scaf_209: 290126-297388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_209: 290126-290625 Trifolium pratense
Tp57577_TGAC_v2_gene9404 0.5kb downstream 0.5kb downstream 7263 true Tp57577_TGAC_v2_scaf_209: 290626-297888 Trifolium pratense
Tp57577_TGAC_v2_gene9404 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_scaf_209: 297389-297888 Trifolium pratense
Tp57577_TGAC_v2_gene9404 1.0kb upstream 1.0kb upstream 7763 true Tp57577_TGAC_v2_scaf_209: 289626-297388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_209: 289626-290625 Trifolium pratense
Tp57577_TGAC_v2_gene9404 1.0kb downstream 1.0kb downstream 7763 true Tp57577_TGAC_v2_scaf_209: 290626-298388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_scaf_209: 297389-298388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 2.0kb upstream 2.0kb upstream 8763 true Tp57577_TGAC_v2_scaf_209: 288626-297388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_209: 288626-290625 Trifolium pratense
Tp57577_TGAC_v2_gene9404 2.0kb downstream 2.0kb downstream 8763 true Tp57577_TGAC_v2_scaf_209: 290626-299388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_scaf_209: 297389-299388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 5.0kb upstream 5.0kb upstream 11763 true Tp57577_TGAC_v2_scaf_209: 285626-297388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_scaf_209: 285626-290625 Trifolium pratense
Tp57577_TGAC_v2_gene9404 5.0kb downstream 5.0kb downstream 11763 true Tp57577_TGAC_v2_scaf_209: 290626-302388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_scaf_209: 297389-302388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 10.0kb upstream 10.0kb upstream 16763 true Tp57577_TGAC_v2_scaf_209: 280626-297388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_scaf_209: 280626-290625 Trifolium pratense
Tp57577_TGAC_v2_gene9404 10.0kb downstream 10.0kb downstream 16763 true Tp57577_TGAC_v2_scaf_209: 290626-307388 Trifolium pratense
Tp57577_TGAC_v2_gene9404 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_scaf_209: 297389-307388 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301111 5265 Fabidae View MSA
124063460 5270 Rosid View MSA
123739745 5271 Pentapetalae View MSA
122788852 5272 Eudicot View MSA
122042200 5273 Angiosperm View MSA
121348163 5274 Embryophyte View MSA
123426103 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain