Gene : Tp57577_TGAC_v2_gene20008 T. pratense v2
Defline:  (1 of 13) PF00069//PF13947 - Protein kinase domain (Pkinase) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  1966
Name:  ? Tp57577_TGAC_v2_gene20008 Secondary Identifier:  ? PAC:35971483
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-7409 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene20008 0.5kb upstream 0.5kb upstream 3452 true Tp57577_TGAC_v2_LG2: 18896551-18900002 Trifolium pratense
Tp57577_TGAC_v2_gene20008 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 18899503-18900002 Trifolium pratense
Tp57577_TGAC_v2_gene20008 0.5kb downstream 0.5kb downstream 3452 true Tp57577_TGAC_v2_LG2: 18896051-18899502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 18896051-18896550 Trifolium pratense
Tp57577_TGAC_v2_gene20008 1.0kb upstream 1.0kb upstream 3952 true Tp57577_TGAC_v2_LG2: 18896551-18900502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 18899503-18900502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 1.0kb downstream 1.0kb downstream 3952 true Tp57577_TGAC_v2_LG2: 18895551-18899502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 18895551-18896550 Trifolium pratense
Tp57577_TGAC_v2_gene20008 2.0kb upstream 2.0kb upstream 4952 true Tp57577_TGAC_v2_LG2: 18896551-18901502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 18899503-18901502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 2.0kb downstream 2.0kb downstream 4952 true Tp57577_TGAC_v2_LG2: 18894551-18899502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 18894551-18896550 Trifolium pratense
Tp57577_TGAC_v2_gene20008 5.0kb upstream 5.0kb upstream 7952 true Tp57577_TGAC_v2_LG2: 18896551-18904502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 18899503-18904502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 5.0kb downstream 5.0kb downstream 7952 true Tp57577_TGAC_v2_LG2: 18891551-18899502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 18891551-18896550 Trifolium pratense
Tp57577_TGAC_v2_gene20008 10.0kb upstream 10.0kb upstream 12952 true Tp57577_TGAC_v2_LG2: 18896551-18909502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 18899503-18909502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 10.0kb downstream 10.0kb downstream 12952 true Tp57577_TGAC_v2_LG2: 18886551-18899502 Trifolium pratense
Tp57577_TGAC_v2_gene20008 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 18886551-18896550 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314435 5265 Fabidae View MSA
124074937 5270 Rosid View MSA
123753765 5271 Pentapetalae View MSA
122797900 5272 Eudicot View MSA
122051692 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain