Gene : Tp57577_TGAC_v2_gene16209 T. pratense v2
Defline:  (1 of 1) PTHR12161:SF21 - REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN Genomic Order:  408
Name:  ? Tp57577_TGAC_v2_gene16209 Secondary Identifier:  ? PAC:35969784
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene16209 0.5kb upstream 0.5kb upstream 5780 true Tp57577_TGAC_v2_LG2: 4027507-4033286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 4027507-4028006 Trifolium pratense
Tp57577_TGAC_v2_gene16209 0.5kb downstream 0.5kb downstream 5780 true Tp57577_TGAC_v2_LG2: 4028007-4033786 Trifolium pratense
Tp57577_TGAC_v2_gene16209 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 4033287-4033786 Trifolium pratense
Tp57577_TGAC_v2_gene16209 1.0kb upstream 1.0kb upstream 6280 true Tp57577_TGAC_v2_LG2: 4027007-4033286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 4027007-4028006 Trifolium pratense
Tp57577_TGAC_v2_gene16209 1.0kb downstream 1.0kb downstream 6280 true Tp57577_TGAC_v2_LG2: 4028007-4034286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 4033287-4034286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 2.0kb upstream 2.0kb upstream 7280 true Tp57577_TGAC_v2_LG2: 4026007-4033286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 4026007-4028006 Trifolium pratense
Tp57577_TGAC_v2_gene16209 2.0kb downstream 2.0kb downstream 7280 true Tp57577_TGAC_v2_LG2: 4028007-4035286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 4033287-4035286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 5.0kb upstream 5.0kb upstream 10280 true Tp57577_TGAC_v2_LG2: 4023007-4033286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 4023007-4028006 Trifolium pratense
Tp57577_TGAC_v2_gene16209 5.0kb downstream 5.0kb downstream 10280 true Tp57577_TGAC_v2_LG2: 4028007-4038286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 4033287-4038286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 10.0kb upstream 10.0kb upstream 15280 true Tp57577_TGAC_v2_LG2: 4018007-4033286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 4018007-4028006 Trifolium pratense
Tp57577_TGAC_v2_gene16209 10.0kb downstream 10.0kb downstream 15280 true Tp57577_TGAC_v2_LG2: 4028007-4043286 Trifolium pratense
Tp57577_TGAC_v2_gene16209 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 4033287-4043286 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301287 5265 Fabidae View MSA
124068076 5270 Rosid View MSA
123736868 5271 Pentapetalae View MSA
122789571 5272 Eudicot View MSA
122045314 5273 Angiosperm View MSA
121350449 5274 Embryophyte View MSA
123424640 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain