Gene : Tp57577_TGAC_v2_gene25924 T. pratense v2
Defline:  (1 of 35) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  3225
Name:  ? Tp57577_TGAC_v2_gene25924 Secondary Identifier:  ? PAC:35972158
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene25924 0.5kb upstream 0.5kb upstream 9895 true Tp57577_TGAC_v2_LG2: 28984738-28994632 Trifolium pratense
Tp57577_TGAC_v2_gene25924 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG2: 28994133-28994632 Trifolium pratense
Tp57577_TGAC_v2_gene25924 0.5kb downstream 0.5kb downstream 9895 true Tp57577_TGAC_v2_LG2: 28984238-28994132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG2: 28984238-28984737 Trifolium pratense
Tp57577_TGAC_v2_gene25924 1.0kb upstream 1.0kb upstream 10395 true Tp57577_TGAC_v2_LG2: 28984738-28995132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG2: 28994133-28995132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 1.0kb downstream 1.0kb downstream 10395 true Tp57577_TGAC_v2_LG2: 28983738-28994132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG2: 28983738-28984737 Trifolium pratense
Tp57577_TGAC_v2_gene25924 2.0kb upstream 2.0kb upstream 11395 true Tp57577_TGAC_v2_LG2: 28984738-28996132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG2: 28994133-28996132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 2.0kb downstream 2.0kb downstream 11395 true Tp57577_TGAC_v2_LG2: 28982738-28994132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG2: 28982738-28984737 Trifolium pratense
Tp57577_TGAC_v2_gene25924 5.0kb upstream 5.0kb upstream 14395 true Tp57577_TGAC_v2_LG2: 28984738-28999132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG2: 28994133-28999132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 5.0kb downstream 5.0kb downstream 14395 true Tp57577_TGAC_v2_LG2: 28979738-28994132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG2: 28979738-28984737 Trifolium pratense
Tp57577_TGAC_v2_gene25924 10.0kb upstream 10.0kb upstream 19395 true Tp57577_TGAC_v2_LG2: 28984738-29004132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG2: 28994133-29004132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 10.0kb downstream 10.0kb downstream 19395 true Tp57577_TGAC_v2_LG2: 28974738-28994132 Trifolium pratense
Tp57577_TGAC_v2_gene25924 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG2: 28974738-28984737 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306882 5265 Fabidae View MSA
124071393 5270 Rosid View MSA
123738469 5271 Pentapetalae View MSA
122788721 5272 Eudicot View MSA
122045808 5273 Angiosperm View MSA
121347981 5274 Embryophyte View MSA
123380700 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain