Gene : Tp57577_TGAC_v2_gene10415 T. pratense v2

Defline:  (1 of 2) 2.3.3.13 - 2-isopropylmalate synthase / Isopropylmalate synthetase Genomic Order:  532
Name:  ? Tp57577_TGAC_v2_gene10415 Secondary Identifier:  ? PAC:35980751

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense BRANCHED-CHAIN-AA-SYN-PWY Trifolium pratense pathologic  
Tpratense LEUSYN-PWY Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene10415 0.5kb upstream 0.5kb upstream 6829 true Tp57577_TGAC_v2_LG1: 4034445-4041273 Trifolium pratense
Tp57577_TGAC_v2_gene10415 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 4040774-4041273 Trifolium pratense
Tp57577_TGAC_v2_gene10415 0.5kb downstream 0.5kb downstream 6829 true Tp57577_TGAC_v2_LG1: 4033945-4040773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 4033945-4034444 Trifolium pratense
Tp57577_TGAC_v2_gene10415 1.0kb upstream 1.0kb upstream 7329 true Tp57577_TGAC_v2_LG1: 4034445-4041773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 4040774-4041773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 1.0kb downstream 1.0kb downstream 7329 true Tp57577_TGAC_v2_LG1: 4033445-4040773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 4033445-4034444 Trifolium pratense
Tp57577_TGAC_v2_gene10415 2.0kb upstream 2.0kb upstream 8329 true Tp57577_TGAC_v2_LG1: 4034445-4042773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 4040774-4042773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 2.0kb downstream 2.0kb downstream 8329 true Tp57577_TGAC_v2_LG1: 4032445-4040773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 4032445-4034444 Trifolium pratense
Tp57577_TGAC_v2_gene10415 5.0kb upstream 5.0kb upstream 11329 true Tp57577_TGAC_v2_LG1: 4034445-4045773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 4040774-4045773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 5.0kb downstream 5.0kb downstream 11329 true Tp57577_TGAC_v2_LG1: 4029445-4040773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 4029445-4034444 Trifolium pratense
Tp57577_TGAC_v2_gene10415 10.0kb upstream 10.0kb upstream 16329 true Tp57577_TGAC_v2_LG1: 4034445-4050773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 4040774-4050773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 10.0kb downstream 10.0kb downstream 16329 true Tp57577_TGAC_v2_LG1: 4024445-4040773 Trifolium pratense
Tp57577_TGAC_v2_gene10415 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 4024445-4034444 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305643 5265 Fabidae View MSA
124073887 5270 Rosid View MSA
123749835 5271 Pentapetalae View MSA
122795041 5272 Eudicot View MSA
122042075 5273 Angiosperm View MSA
121343846 5274 Embryophyte View MSA
123424493 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain