Gene : Tp57577_TGAC_v2_gene22310 T. pratense v2
Defline:  (1 of 9) K01213 - galacturan 1,4-alpha-galacturonidase (E3.2.1.67) Genomic Order:  3096
Name:  ? Tp57577_TGAC_v2_gene22310 Secondary Identifier:  ? PAC:35978433
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-1081 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene22310 0.5kb upstream 0.5kb upstream 5467 true Tp57577_TGAC_v2_LG1: 26466008-26471474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG1: 26466008-26466507 Trifolium pratense
Tp57577_TGAC_v2_gene22310 0.5kb downstream 0.5kb downstream 5467 true Tp57577_TGAC_v2_LG1: 26466508-26471974 Trifolium pratense
Tp57577_TGAC_v2_gene22310 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG1: 26471475-26471974 Trifolium pratense
Tp57577_TGAC_v2_gene22310 1.0kb upstream 1.0kb upstream 5967 true Tp57577_TGAC_v2_LG1: 26465508-26471474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG1: 26465508-26466507 Trifolium pratense
Tp57577_TGAC_v2_gene22310 1.0kb downstream 1.0kb downstream 5967 true Tp57577_TGAC_v2_LG1: 26466508-26472474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG1: 26471475-26472474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 2.0kb upstream 2.0kb upstream 6967 true Tp57577_TGAC_v2_LG1: 26464508-26471474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG1: 26464508-26466507 Trifolium pratense
Tp57577_TGAC_v2_gene22310 2.0kb downstream 2.0kb downstream 6967 true Tp57577_TGAC_v2_LG1: 26466508-26473474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG1: 26471475-26473474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 5.0kb upstream 5.0kb upstream 9967 true Tp57577_TGAC_v2_LG1: 26461508-26471474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG1: 26461508-26466507 Trifolium pratense
Tp57577_TGAC_v2_gene22310 5.0kb downstream 5.0kb downstream 9967 true Tp57577_TGAC_v2_LG1: 26466508-26476474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG1: 26471475-26476474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 10.0kb upstream 10.0kb upstream 14967 true Tp57577_TGAC_v2_LG1: 26456508-26471474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG1: 26456508-26466507 Trifolium pratense
Tp57577_TGAC_v2_gene22310 10.0kb downstream 10.0kb downstream 14967 true Tp57577_TGAC_v2_LG1: 26466508-26481474 Trifolium pratense
Tp57577_TGAC_v2_gene22310 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG1: 26471475-26481474 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310493 5265 Fabidae View MSA
124071236 5270 Rosid View MSA
123746324 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain