Gene : Tp57577_TGAC_v2_gene12117 T. pratense v2
Defline:  (1 of 1) PTHR11771//PTHR11771:SF56 - LIPOXYGENASE // SUBFAMILY NOT NAMED Genomic Order:  1271
Name:  ? Tp57577_TGAC_v2_gene12117 Secondary Identifier:  ? PAC:35990016
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Tpratense PWY-5409 Trifolium pratense pathologic  
Tpratense PWY-5410 Trifolium pratense pathologic  
Tpratense PWY-735 Trifolium pratense pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene12117 0.5kb upstream 0.5kb upstream 8775 true Tp57577_TGAC_v2_LG3: 9952791-9961565 Trifolium pratense
Tp57577_TGAC_v2_gene12117 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_LG3: 9961066-9961565 Trifolium pratense
Tp57577_TGAC_v2_gene12117 0.5kb downstream 0.5kb downstream 8775 true Tp57577_TGAC_v2_LG3: 9952291-9961065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 0.5kb downstream 0.5kb downstream 500 false Tp57577_TGAC_v2_LG3: 9952291-9952790 Trifolium pratense
Tp57577_TGAC_v2_gene12117 1.0kb upstream 1.0kb upstream 9275 true Tp57577_TGAC_v2_LG3: 9952791-9962065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_LG3: 9961066-9962065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 1.0kb downstream 1.0kb downstream 9275 true Tp57577_TGAC_v2_LG3: 9951791-9961065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 1.0kb downstream 1.0kb downstream 1000 false Tp57577_TGAC_v2_LG3: 9951791-9952790 Trifolium pratense
Tp57577_TGAC_v2_gene12117 2.0kb upstream 2.0kb upstream 10275 true Tp57577_TGAC_v2_LG3: 9952791-9963065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_LG3: 9961066-9963065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 2.0kb downstream 2.0kb downstream 10275 true Tp57577_TGAC_v2_LG3: 9950791-9961065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 2.0kb downstream 2.0kb downstream 2000 false Tp57577_TGAC_v2_LG3: 9950791-9952790 Trifolium pratense
Tp57577_TGAC_v2_gene12117 5.0kb upstream 5.0kb upstream 13275 true Tp57577_TGAC_v2_LG3: 9952791-9966065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 5.0kb upstream 5.0kb upstream 5000 false Tp57577_TGAC_v2_LG3: 9961066-9966065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 5.0kb downstream 5.0kb downstream 13275 true Tp57577_TGAC_v2_LG3: 9947791-9961065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 5.0kb downstream 5.0kb downstream 5000 false Tp57577_TGAC_v2_LG3: 9947791-9952790 Trifolium pratense
Tp57577_TGAC_v2_gene12117 10.0kb upstream 10.0kb upstream 18275 true Tp57577_TGAC_v2_LG3: 9952791-9971065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 10.0kb upstream 10.0kb upstream 10000 false Tp57577_TGAC_v2_LG3: 9961066-9971065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 10.0kb downstream 10.0kb downstream 18275 true Tp57577_TGAC_v2_LG3: 9942791-9961065 Trifolium pratense
Tp57577_TGAC_v2_gene12117 10.0kb downstream 10.0kb downstream 10000 false Tp57577_TGAC_v2_LG3: 9942791-9952790 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313954 5265 Fabidae View MSA
124060591 5270 Rosid View MSA
123743150 5271 Pentapetalae View MSA
122789243 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain