Gene : Tp57577_TGAC_v2_gene39925 T. pratense v2
Defline:  (1 of 106) PF03732 - Retrotransposon gag protein (Retrotrans_gag) Genomic Order:  2
Name:  ? Tp57577_TGAC_v2_gene39925 Secondary Identifier:  ? PAC:35968917
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Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Tp57577_TGAC_v2_gene39925 0.5kb upstream 0.5kb upstream 1160 true Tp57577_TGAC_v2_scaf_4708: 1596-2755 Trifolium pratense
Tp57577_TGAC_v2_gene39925 0.5kb upstream 0.5kb upstream 500 false Tp57577_TGAC_v2_scaf_4708: 1596-2095 Trifolium pratense
Tp57577_TGAC_v2_gene39925 0.5kb downstream 0.5kb downstream 661 true Tp57577_TGAC_v2_scaf_4708: 2096-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 0.5kb downstream 0.5kb downstream 1 false Tp57577_TGAC_v2_scaf_4708: 2756-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 1.0kb upstream 1.0kb upstream 1660 true Tp57577_TGAC_v2_scaf_4708: 1096-2755 Trifolium pratense
Tp57577_TGAC_v2_gene39925 1.0kb upstream 1.0kb upstream 1000 false Tp57577_TGAC_v2_scaf_4708: 1096-2095 Trifolium pratense
Tp57577_TGAC_v2_gene39925 1.0kb downstream 1.0kb downstream 661 true Tp57577_TGAC_v2_scaf_4708: 2096-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 1.0kb downstream 1.0kb downstream 1 false Tp57577_TGAC_v2_scaf_4708: 2756-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 2.0kb upstream 2.0kb upstream 2660 true Tp57577_TGAC_v2_scaf_4708: 96-2755 Trifolium pratense
Tp57577_TGAC_v2_gene39925 2.0kb upstream 2.0kb upstream 2000 false Tp57577_TGAC_v2_scaf_4708: 96-2095 Trifolium pratense
Tp57577_TGAC_v2_gene39925 2.0kb downstream 2.0kb downstream 661 true Tp57577_TGAC_v2_scaf_4708: 2096-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 2.0kb downstream 2.0kb downstream 1 false Tp57577_TGAC_v2_scaf_4708: 2756-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 5.0kb upstream 5.0kb upstream 2755 true Tp57577_TGAC_v2_scaf_4708: 1-2755 Trifolium pratense
Tp57577_TGAC_v2_gene39925 5.0kb upstream 5.0kb upstream 2095 false Tp57577_TGAC_v2_scaf_4708: 1-2095 Trifolium pratense
Tp57577_TGAC_v2_gene39925 5.0kb downstream 5.0kb downstream 661 true Tp57577_TGAC_v2_scaf_4708: 2096-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 5.0kb downstream 5.0kb downstream 1 false Tp57577_TGAC_v2_scaf_4708: 2756-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 10.0kb upstream 10.0kb upstream 2755 true Tp57577_TGAC_v2_scaf_4708: 1-2755 Trifolium pratense
Tp57577_TGAC_v2_gene39925 10.0kb upstream 10.0kb upstream 2095 false Tp57577_TGAC_v2_scaf_4708: 1-2095 Trifolium pratense
Tp57577_TGAC_v2_gene39925 10.0kb downstream 10.0kb downstream 661 true Tp57577_TGAC_v2_scaf_4708: 2096-2756 Trifolium pratense
Tp57577_TGAC_v2_gene39925 10.0kb downstream 10.0kb downstream 1 false Tp57577_TGAC_v2_scaf_4708: 2756-2756 Trifolium pratense

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298158 5265 Fabidae View MSA
124074671 5270 Rosid View MSA
123753620 5271 Pentapetalae View MSA
122797847 5272 Eudicot View MSA
122051084 5273 Angiosperm View MSA
123429186 5275 Viridiplantae View MSA
121351752 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain