Gene : Solyc01g088710.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR31773:SF11 - METACASPASE-2 Description:  Metacaspase (AHRD V1 ***- A8NU42_COPC7); contains Interpro domain(s) IPR011600 Peptidase C14, caspase catalytic
Genomic Order:  2325 Name:  ? Solyc01g088710.2
Secondary Identifier:  ? PAC:36140309
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g088710.2 0.5kb upstream 0.5kb upstream 6902 true SL2.50ch01: 83469178-83476079 Solanum lycopersicum
Solyc01g088710.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 83475580-83476079 Solanum lycopersicum
Solyc01g088710.2 0.5kb downstream 0.5kb downstream 6902 true SL2.50ch01: 83468678-83475579 Solanum lycopersicum
Solyc01g088710.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 83468678-83469177 Solanum lycopersicum
Solyc01g088710.2 1.0kb upstream 1.0kb upstream 7402 true SL2.50ch01: 83469178-83476579 Solanum lycopersicum
Solyc01g088710.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 83475580-83476579 Solanum lycopersicum
Solyc01g088710.2 1.0kb downstream 1.0kb downstream 7402 true SL2.50ch01: 83468178-83475579 Solanum lycopersicum
Solyc01g088710.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 83468178-83469177 Solanum lycopersicum
Solyc01g088710.2 2.0kb upstream 2.0kb upstream 8402 true SL2.50ch01: 83469178-83477579 Solanum lycopersicum
Solyc01g088710.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 83475580-83477579 Solanum lycopersicum
Solyc01g088710.2 2.0kb downstream 2.0kb downstream 8402 true SL2.50ch01: 83467178-83475579 Solanum lycopersicum
Solyc01g088710.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 83467178-83469177 Solanum lycopersicum
Solyc01g088710.2 5.0kb upstream 5.0kb upstream 11402 true SL2.50ch01: 83469178-83480579 Solanum lycopersicum
Solyc01g088710.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 83475580-83480579 Solanum lycopersicum
Solyc01g088710.2 5.0kb downstream 5.0kb downstream 11402 true SL2.50ch01: 83464178-83475579 Solanum lycopersicum
Solyc01g088710.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 83464178-83469177 Solanum lycopersicum
Solyc01g088710.2 10.0kb upstream 10.0kb upstream 16402 true SL2.50ch01: 83469178-83485579 Solanum lycopersicum
Solyc01g088710.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 83475580-83485579 Solanum lycopersicum
Solyc01g088710.2 10.0kb downstream 10.0kb downstream 16402 true SL2.50ch01: 83459178-83475579 Solanum lycopersicum
Solyc01g088710.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 83459178-83469177 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469508 5263 Asterids View MSA
123741855 5271 Pentapetalae View MSA
122790648 5272 Eudicot View MSA
122050099 5273 Angiosperm View MSA
123428899 5275 Viridiplantae View MSA
121348125 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain