Gene : Solyc01g088670.1 S. lycopersicum ITAG2.4
Defline:  (1 of 47) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7M761_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  2321 Name:  ? Solyc01g088670.1
Secondary Identifier:  ? PAC:36137558
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g088670.1 0.5kb upstream 0.5kb upstream 3230 true SL2.50ch01: 83431349-83434578 Solanum lycopersicum
Solyc01g088670.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 83431349-83431848 Solanum lycopersicum
Solyc01g088670.1 0.5kb downstream 0.5kb downstream 3230 true SL2.50ch01: 83431849-83435078 Solanum lycopersicum
Solyc01g088670.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 83434579-83435078 Solanum lycopersicum
Solyc01g088670.1 1.0kb upstream 1.0kb upstream 3730 true SL2.50ch01: 83430849-83434578 Solanum lycopersicum
Solyc01g088670.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 83430849-83431848 Solanum lycopersicum
Solyc01g088670.1 1.0kb downstream 1.0kb downstream 3730 true SL2.50ch01: 83431849-83435578 Solanum lycopersicum
Solyc01g088670.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 83434579-83435578 Solanum lycopersicum
Solyc01g088670.1 2.0kb upstream 2.0kb upstream 4730 true SL2.50ch01: 83429849-83434578 Solanum lycopersicum
Solyc01g088670.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 83429849-83431848 Solanum lycopersicum
Solyc01g088670.1 2.0kb downstream 2.0kb downstream 4730 true SL2.50ch01: 83431849-83436578 Solanum lycopersicum
Solyc01g088670.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 83434579-83436578 Solanum lycopersicum
Solyc01g088670.1 5.0kb upstream 5.0kb upstream 7730 true SL2.50ch01: 83426849-83434578 Solanum lycopersicum
Solyc01g088670.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 83426849-83431848 Solanum lycopersicum
Solyc01g088670.1 5.0kb downstream 5.0kb downstream 7730 true SL2.50ch01: 83431849-83439578 Solanum lycopersicum
Solyc01g088670.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 83434579-83439578 Solanum lycopersicum
Solyc01g088670.1 10.0kb upstream 10.0kb upstream 12730 true SL2.50ch01: 83421849-83434578 Solanum lycopersicum
Solyc01g088670.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 83421849-83431848 Solanum lycopersicum
Solyc01g088670.1 10.0kb downstream 10.0kb downstream 12730 true SL2.50ch01: 83431849-83444578 Solanum lycopersicum
Solyc01g088670.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 83434579-83444578 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474051 5263 Asterids View MSA
123747473 5271 Pentapetalae View MSA
122794645 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain