Gene : Solyc02g077470.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) PTHR12499//PTHR12499:SF2 - OPTIC ATROPHY 3 PROTEIN OPA3 // SUBFAMILY NOT NAMED Description:  Optic atrophy 3 protein homolog (AHRD V1 **-- OPA3_DANRE); contains Interpro domain(s) IPR010754 Optic atrophy 3-like
Genomic Order:  1629 Name:  ? Solyc02g077470.2
Secondary Identifier:  ? PAC:36157953
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc02g077470.2 0.5kb upstream 0.5kb upstream 7645 true SL2.50ch02: 42398206-42405850 Solanum lycopersicum
Solyc02g077470.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch02: 42405351-42405850 Solanum lycopersicum
Solyc02g077470.2 0.5kb downstream 0.5kb downstream 7645 true SL2.50ch02: 42397706-42405350 Solanum lycopersicum
Solyc02g077470.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch02: 42397706-42398205 Solanum lycopersicum
Solyc02g077470.2 1.0kb upstream 1.0kb upstream 8145 true SL2.50ch02: 42398206-42406350 Solanum lycopersicum
Solyc02g077470.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch02: 42405351-42406350 Solanum lycopersicum
Solyc02g077470.2 1.0kb downstream 1.0kb downstream 8145 true SL2.50ch02: 42397206-42405350 Solanum lycopersicum
Solyc02g077470.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch02: 42397206-42398205 Solanum lycopersicum
Solyc02g077470.2 2.0kb upstream 2.0kb upstream 9145 true SL2.50ch02: 42398206-42407350 Solanum lycopersicum
Solyc02g077470.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch02: 42405351-42407350 Solanum lycopersicum
Solyc02g077470.2 2.0kb downstream 2.0kb downstream 9145 true SL2.50ch02: 42396206-42405350 Solanum lycopersicum
Solyc02g077470.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch02: 42396206-42398205 Solanum lycopersicum
Solyc02g077470.2 5.0kb upstream 5.0kb upstream 12145 true SL2.50ch02: 42398206-42410350 Solanum lycopersicum
Solyc02g077470.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch02: 42405351-42410350 Solanum lycopersicum
Solyc02g077470.2 5.0kb downstream 5.0kb downstream 12145 true SL2.50ch02: 42393206-42405350 Solanum lycopersicum
Solyc02g077470.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch02: 42393206-42398205 Solanum lycopersicum
Solyc02g077470.2 10.0kb upstream 10.0kb upstream 17145 true SL2.50ch02: 42398206-42415350 Solanum lycopersicum
Solyc02g077470.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch02: 42405351-42415350 Solanum lycopersicum
Solyc02g077470.2 10.0kb downstream 10.0kb downstream 17145 true SL2.50ch02: 42388206-42405350 Solanum lycopersicum
Solyc02g077470.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch02: 42388206-42398205 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467720 5263 Asterids View MSA
123743505 5271 Pentapetalae View MSA
122788566 5272 Eudicot View MSA
122047456 5273 Angiosperm View MSA
121344261 5274 Embryophyte View MSA
123428065 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain