Gene : Solyc01g057900.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K10589 - ubiquitin-protein ligase E3 C (UBE3C) Description:  Ubiquitin-protein ligase (AHRD V1 *-** Q17BV9_AEDAE); contains Interpro domain(s) IPR000569 HECT
Genomic Order:  1358 Name:  ? Solyc01g057900.2
Secondary Identifier:  ? PAC:36140752
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g057900.2 0.5kb upstream 0.5kb upstream 37648 true SL2.50ch01: 64141356-64179003 Solanum lycopersicum
Solyc01g057900.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 64178504-64179003 Solanum lycopersicum
Solyc01g057900.2 0.5kb downstream 0.5kb downstream 37648 true SL2.50ch01: 64140856-64178503 Solanum lycopersicum
Solyc01g057900.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 64140856-64141355 Solanum lycopersicum
Solyc01g057900.2 1.0kb upstream 1.0kb upstream 38148 true SL2.50ch01: 64141356-64179503 Solanum lycopersicum
Solyc01g057900.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 64178504-64179503 Solanum lycopersicum
Solyc01g057900.2 1.0kb downstream 1.0kb downstream 38148 true SL2.50ch01: 64140356-64178503 Solanum lycopersicum
Solyc01g057900.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 64140356-64141355 Solanum lycopersicum
Solyc01g057900.2 2.0kb upstream 2.0kb upstream 39148 true SL2.50ch01: 64141356-64180503 Solanum lycopersicum
Solyc01g057900.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 64178504-64180503 Solanum lycopersicum
Solyc01g057900.2 2.0kb downstream 2.0kb downstream 39148 true SL2.50ch01: 64139356-64178503 Solanum lycopersicum
Solyc01g057900.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 64139356-64141355 Solanum lycopersicum
Solyc01g057900.2 5.0kb upstream 5.0kb upstream 42148 true SL2.50ch01: 64141356-64183503 Solanum lycopersicum
Solyc01g057900.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 64178504-64183503 Solanum lycopersicum
Solyc01g057900.2 5.0kb downstream 5.0kb downstream 42148 true SL2.50ch01: 64136356-64178503 Solanum lycopersicum
Solyc01g057900.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 64136356-64141355 Solanum lycopersicum
Solyc01g057900.2 10.0kb upstream 10.0kb upstream 47148 true SL2.50ch01: 64141356-64188503 Solanum lycopersicum
Solyc01g057900.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 64178504-64188503 Solanum lycopersicum
Solyc01g057900.2 10.0kb downstream 10.0kb downstream 47148 true SL2.50ch01: 64131356-64178503 Solanum lycopersicum
Solyc01g057900.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 64131356-64141355 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121474036 5263 Asterids View MSA
123740343 5271 Pentapetalae View MSA
122788318 5272 Eudicot View MSA
122046917 5273 Angiosperm View MSA
123429069 5275 Viridiplantae View MSA
121344767 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain