Gene : Solyc01g028930.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K03120 - transcription initiation factor TFIID TATA-box-binding protein (TBP, tbp) Description:  TATA-box binding protein (AHRD V1 ***- Q9ZTX5_PHAVU); contains Interpro domain(s) IPR000814 TATA-box binding
Genomic Order:  1101 Name:  ? Solyc01g028930.2
Secondary Identifier:  ? PAC:36137657
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g028930.2 0.5kb upstream 0.5kb upstream 11570 true SL2.50ch01: 39925151-39936720 Solanum lycopersicum
Solyc01g028930.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 39936221-39936720 Solanum lycopersicum
Solyc01g028930.2 0.5kb downstream 0.5kb downstream 11570 true SL2.50ch01: 39924651-39936220 Solanum lycopersicum
Solyc01g028930.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 39924651-39925150 Solanum lycopersicum
Solyc01g028930.2 1.0kb upstream 1.0kb upstream 12070 true SL2.50ch01: 39925151-39937220 Solanum lycopersicum
Solyc01g028930.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 39936221-39937220 Solanum lycopersicum
Solyc01g028930.2 1.0kb downstream 1.0kb downstream 12070 true SL2.50ch01: 39924151-39936220 Solanum lycopersicum
Solyc01g028930.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 39924151-39925150 Solanum lycopersicum
Solyc01g028930.2 2.0kb upstream 2.0kb upstream 13070 true SL2.50ch01: 39925151-39938220 Solanum lycopersicum
Solyc01g028930.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 39936221-39938220 Solanum lycopersicum
Solyc01g028930.2 2.0kb downstream 2.0kb downstream 13070 true SL2.50ch01: 39923151-39936220 Solanum lycopersicum
Solyc01g028930.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 39923151-39925150 Solanum lycopersicum
Solyc01g028930.2 5.0kb upstream 5.0kb upstream 16070 true SL2.50ch01: 39925151-39941220 Solanum lycopersicum
Solyc01g028930.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 39936221-39941220 Solanum lycopersicum
Solyc01g028930.2 5.0kb downstream 5.0kb downstream 16070 true SL2.50ch01: 39920151-39936220 Solanum lycopersicum
Solyc01g028930.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 39920151-39925150 Solanum lycopersicum
Solyc01g028930.2 10.0kb upstream 10.0kb upstream 21070 true SL2.50ch01: 39925151-39946220 Solanum lycopersicum
Solyc01g028930.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 39936221-39946220 Solanum lycopersicum
Solyc01g028930.2 10.0kb downstream 10.0kb downstream 21070 true SL2.50ch01: 39915151-39936220 Solanum lycopersicum
Solyc01g028930.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 39915151-39925150 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121472147 5263 Asterids View MSA
123751574 5271 Pentapetalae View MSA
122793638 5272 Eudicot View MSA
122046126 5273 Angiosperm View MSA
123429185 5275 Viridiplantae View MSA
121349658 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain