Gene : Solyc01g005940.2 S. lycopersicum ITAG2.4
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Description:  Phytoene synthase 3
Genomic Order:  95 Name:  ? Solyc01g005940.2
Secondary Identifier:  ? PAC:36138581
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum CAROTENOID-PWY Solanum lycopersicum pathologic  
Slycopersicum PWY-6475 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g005940.2 0.5kb upstream 0.5kb upstream 3729 true SL2.50ch01: 613455-617183 Solanum lycopersicum
Solyc01g005940.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 613455-613954 Solanum lycopersicum
Solyc01g005940.2 0.5kb downstream 0.5kb downstream 3729 true SL2.50ch01: 613955-617683 Solanum lycopersicum
Solyc01g005940.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 617184-617683 Solanum lycopersicum
Solyc01g005940.2 1.0kb upstream 1.0kb upstream 4229 true SL2.50ch01: 612955-617183 Solanum lycopersicum
Solyc01g005940.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 612955-613954 Solanum lycopersicum
Solyc01g005940.2 1.0kb downstream 1.0kb downstream 4229 true SL2.50ch01: 613955-618183 Solanum lycopersicum
Solyc01g005940.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 617184-618183 Solanum lycopersicum
Solyc01g005940.2 2.0kb upstream 2.0kb upstream 5229 true SL2.50ch01: 611955-617183 Solanum lycopersicum
Solyc01g005940.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 611955-613954 Solanum lycopersicum
Solyc01g005940.2 2.0kb downstream 2.0kb downstream 5229 true SL2.50ch01: 613955-619183 Solanum lycopersicum
Solyc01g005940.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 617184-619183 Solanum lycopersicum
Solyc01g005940.2 5.0kb upstream 5.0kb upstream 8229 true SL2.50ch01: 608955-617183 Solanum lycopersicum
Solyc01g005940.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 608955-613954 Solanum lycopersicum
Solyc01g005940.2 5.0kb downstream 5.0kb downstream 8229 true SL2.50ch01: 613955-622183 Solanum lycopersicum
Solyc01g005940.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 617184-622183 Solanum lycopersicum
Solyc01g005940.2 10.0kb upstream 10.0kb upstream 13229 true SL2.50ch01: 603955-617183 Solanum lycopersicum
Solyc01g005940.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 603955-613954 Solanum lycopersicum
Solyc01g005940.2 10.0kb downstream 10.0kb downstream 13229 true SL2.50ch01: 613955-627183 Solanum lycopersicum
Solyc01g005940.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 617184-627183 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
121467558 5263 Asterids View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain