Gene : Solyc01g007000.2 S. lycopersicum ITAG2.4
Defline:  (1 of 5) PTHR22849//PTHR22849:SF48 - WDSAM1 PROTEIN // SUBFAMILY NOT NAMED Description:  U-box domain-containing protein (AHRD V1 ***- D7LU64_ARALY); contains Interpro domain(s) IPR003613 U box domain
Genomic Order:  201 Name:  ? Solyc01g007000.2
Secondary Identifier:  ? PAC:36138153
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g007000.2 0.5kb upstream 0.5kb upstream 1874 true SL2.50ch01: 1567268-1569141 Solanum lycopersicum
Solyc01g007000.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 1567268-1567767 Solanum lycopersicum
Solyc01g007000.2 0.5kb downstream 0.5kb downstream 1874 true SL2.50ch01: 1567768-1569641 Solanum lycopersicum
Solyc01g007000.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 1569142-1569641 Solanum lycopersicum
Solyc01g007000.2 1.0kb upstream 1.0kb upstream 2374 true SL2.50ch01: 1566768-1569141 Solanum lycopersicum
Solyc01g007000.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 1566768-1567767 Solanum lycopersicum
Solyc01g007000.2 1.0kb downstream 1.0kb downstream 2374 true SL2.50ch01: 1567768-1570141 Solanum lycopersicum
Solyc01g007000.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 1569142-1570141 Solanum lycopersicum
Solyc01g007000.2 2.0kb upstream 2.0kb upstream 3374 true SL2.50ch01: 1565768-1569141 Solanum lycopersicum
Solyc01g007000.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 1565768-1567767 Solanum lycopersicum
Solyc01g007000.2 2.0kb downstream 2.0kb downstream 3374 true SL2.50ch01: 1567768-1571141 Solanum lycopersicum
Solyc01g007000.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 1569142-1571141 Solanum lycopersicum
Solyc01g007000.2 5.0kb upstream 5.0kb upstream 6374 true SL2.50ch01: 1562768-1569141 Solanum lycopersicum
Solyc01g007000.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 1562768-1567767 Solanum lycopersicum
Solyc01g007000.2 5.0kb downstream 5.0kb downstream 6374 true SL2.50ch01: 1567768-1574141 Solanum lycopersicum
Solyc01g007000.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 1569142-1574141 Solanum lycopersicum
Solyc01g007000.2 10.0kb upstream 10.0kb upstream 11374 true SL2.50ch01: 1557768-1569141 Solanum lycopersicum
Solyc01g007000.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 1557768-1567767 Solanum lycopersicum
Solyc01g007000.2 10.0kb downstream 10.0kb downstream 11374 true SL2.50ch01: 1567768-1579141 Solanum lycopersicum
Solyc01g007000.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 1569142-1579141 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475763 5263 Asterids View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain