Gene : Solyc01g103420.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K14328 - regulator of nonsense transcripts 3 (UPF3, RENT3) Description:  Upf3 regulator of nonsense transcripts-like protein B (AHRD V1 *--- Q2F5U6_BOMMO); contains Interpro domain(s) IPR005120 Regulator of nonsense-mediated decay, UPF3
Genomic Order:  3393 Name:  ? Solyc01g103420.2
Secondary Identifier:  ? PAC:36137742
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g103420.2 0.5kb upstream 0.5kb upstream 12408 true SL2.50ch01: 92025031-92037438 Solanum lycopersicum
Solyc01g103420.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 92025031-92025530 Solanum lycopersicum
Solyc01g103420.2 0.5kb downstream 0.5kb downstream 12408 true SL2.50ch01: 92025531-92037938 Solanum lycopersicum
Solyc01g103420.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 92037439-92037938 Solanum lycopersicum
Solyc01g103420.2 1.0kb upstream 1.0kb upstream 12908 true SL2.50ch01: 92024531-92037438 Solanum lycopersicum
Solyc01g103420.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 92024531-92025530 Solanum lycopersicum
Solyc01g103420.2 1.0kb downstream 1.0kb downstream 12908 true SL2.50ch01: 92025531-92038438 Solanum lycopersicum
Solyc01g103420.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 92037439-92038438 Solanum lycopersicum
Solyc01g103420.2 2.0kb upstream 2.0kb upstream 13908 true SL2.50ch01: 92023531-92037438 Solanum lycopersicum
Solyc01g103420.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 92023531-92025530 Solanum lycopersicum
Solyc01g103420.2 2.0kb downstream 2.0kb downstream 13908 true SL2.50ch01: 92025531-92039438 Solanum lycopersicum
Solyc01g103420.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 92037439-92039438 Solanum lycopersicum
Solyc01g103420.2 5.0kb upstream 5.0kb upstream 16908 true SL2.50ch01: 92020531-92037438 Solanum lycopersicum
Solyc01g103420.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 92020531-92025530 Solanum lycopersicum
Solyc01g103420.2 5.0kb downstream 5.0kb downstream 16908 true SL2.50ch01: 92025531-92042438 Solanum lycopersicum
Solyc01g103420.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 92037439-92042438 Solanum lycopersicum
Solyc01g103420.2 10.0kb upstream 10.0kb upstream 21908 true SL2.50ch01: 92015531-92037438 Solanum lycopersicum
Solyc01g103420.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 92015531-92025530 Solanum lycopersicum
Solyc01g103420.2 10.0kb downstream 10.0kb downstream 21908 true SL2.50ch01: 92025531-92047438 Solanum lycopersicum
Solyc01g103420.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 92037439-92047438 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041498 5273 Angiosperm View MSA
121476335 5263 Asterids View MSA
123750498 5271 Pentapetalae View MSA
122788511 5272 Eudicot View MSA
121351189 5274 Embryophyte View MSA
123425600 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain