Gene : Solyc01g080170.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR10277//PTHR10277:SF38 - HOMOCITRATE SYNTHASE-RELATED // SUBFAMILY NOT NAMED Description:  Hydroxymethylglutaryl-CoA lyase (AHRD V1 ***- B6U7B9_MAIZE); contains Interpro domain(s) IPR000891 Pyruvate carboxyltransferase
Genomic Order:  1932 Name:  ? Solyc01g080170.2
Secondary Identifier:  ? PAC:36138937
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum LEU-DEG2-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g080170.2 0.5kb upstream 0.5kb upstream 9919 true SL2.50ch01: 79384928-79394846 Solanum lycopersicum
Solyc01g080170.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 79384928-79385427 Solanum lycopersicum
Solyc01g080170.2 0.5kb downstream 0.5kb downstream 9919 true SL2.50ch01: 79385428-79395346 Solanum lycopersicum
Solyc01g080170.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 79394847-79395346 Solanum lycopersicum
Solyc01g080170.2 1.0kb upstream 1.0kb upstream 10419 true SL2.50ch01: 79384428-79394846 Solanum lycopersicum
Solyc01g080170.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 79384428-79385427 Solanum lycopersicum
Solyc01g080170.2 1.0kb downstream 1.0kb downstream 10419 true SL2.50ch01: 79385428-79395846 Solanum lycopersicum
Solyc01g080170.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 79394847-79395846 Solanum lycopersicum
Solyc01g080170.2 2.0kb upstream 2.0kb upstream 11419 true SL2.50ch01: 79383428-79394846 Solanum lycopersicum
Solyc01g080170.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 79383428-79385427 Solanum lycopersicum
Solyc01g080170.2 2.0kb downstream 2.0kb downstream 11419 true SL2.50ch01: 79385428-79396846 Solanum lycopersicum
Solyc01g080170.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 79394847-79396846 Solanum lycopersicum
Solyc01g080170.2 5.0kb upstream 5.0kb upstream 14419 true SL2.50ch01: 79380428-79394846 Solanum lycopersicum
Solyc01g080170.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 79380428-79385427 Solanum lycopersicum
Solyc01g080170.2 5.0kb downstream 5.0kb downstream 14419 true SL2.50ch01: 79385428-79399846 Solanum lycopersicum
Solyc01g080170.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 79394847-79399846 Solanum lycopersicum
Solyc01g080170.2 10.0kb upstream 10.0kb upstream 19419 true SL2.50ch01: 79375428-79394846 Solanum lycopersicum
Solyc01g080170.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 79375428-79385427 Solanum lycopersicum
Solyc01g080170.2 10.0kb downstream 10.0kb downstream 19419 true SL2.50ch01: 79385428-79404846 Solanum lycopersicum
Solyc01g080170.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 79394847-79404846 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121467474 5263 Asterids View MSA
123743387 5271 Pentapetalae View MSA
122790168 5272 Eudicot View MSA
122045409 5273 Angiosperm View MSA
121347999 5274 Embryophyte View MSA
123426187 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain