Gene : Solyc01g080450.2 S. lycopersicum ITAG2.4
Defline:  (1 of 174) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7KJV7_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1960 Name:  ? Solyc01g080450.2
Secondary Identifier:  ? PAC:36137980
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g080450.2 0.5kb upstream 0.5kb upstream 2295 true SL2.50ch01: 79689527-79691821 Solanum lycopersicum
Solyc01g080450.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 79691322-79691821 Solanum lycopersicum
Solyc01g080450.2 0.5kb downstream 0.5kb downstream 2295 true SL2.50ch01: 79689027-79691321 Solanum lycopersicum
Solyc01g080450.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 79689027-79689526 Solanum lycopersicum
Solyc01g080450.2 1.0kb upstream 1.0kb upstream 2795 true SL2.50ch01: 79689527-79692321 Solanum lycopersicum
Solyc01g080450.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 79691322-79692321 Solanum lycopersicum
Solyc01g080450.2 1.0kb downstream 1.0kb downstream 2795 true SL2.50ch01: 79688527-79691321 Solanum lycopersicum
Solyc01g080450.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 79688527-79689526 Solanum lycopersicum
Solyc01g080450.2 2.0kb upstream 2.0kb upstream 3795 true SL2.50ch01: 79689527-79693321 Solanum lycopersicum
Solyc01g080450.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 79691322-79693321 Solanum lycopersicum
Solyc01g080450.2 2.0kb downstream 2.0kb downstream 3795 true SL2.50ch01: 79687527-79691321 Solanum lycopersicum
Solyc01g080450.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 79687527-79689526 Solanum lycopersicum
Solyc01g080450.2 5.0kb upstream 5.0kb upstream 6795 true SL2.50ch01: 79689527-79696321 Solanum lycopersicum
Solyc01g080450.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 79691322-79696321 Solanum lycopersicum
Solyc01g080450.2 5.0kb downstream 5.0kb downstream 6795 true SL2.50ch01: 79684527-79691321 Solanum lycopersicum
Solyc01g080450.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 79684527-79689526 Solanum lycopersicum
Solyc01g080450.2 10.0kb upstream 10.0kb upstream 11795 true SL2.50ch01: 79689527-79701321 Solanum lycopersicum
Solyc01g080450.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 79691322-79701321 Solanum lycopersicum
Solyc01g080450.2 10.0kb downstream 10.0kb downstream 11795 true SL2.50ch01: 79679527-79691321 Solanum lycopersicum
Solyc01g080450.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 79679527-79689526 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041217 5273 Angiosperm View MSA
121414630 5263 Asterids View MSA
123740390 5271 Pentapetalae View MSA
122769977 5272 Eudicot View MSA
121309817 5274 Embryophyte View MSA
123347469 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain