Gene : Solyc01g107980.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) PTHR22849:SF52 - E3 UBIQUITIN-PROTEIN LIGASE PUB24-RELATED Description:  U-box domain-containing protein (AHRD V1 ***- A8IXJ0_BRACM); contains Interpro domain(s) IPR011989 Armadillo-like helical
Genomic Order:  3847 Name:  ? Solyc01g107980.2
Secondary Identifier:  ? PAC:36139749
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum PWY-7511 Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g107980.2 0.5kb upstream 0.5kb upstream 2061 true SL2.50ch01: 95361899-95363959 Solanum lycopersicum
Solyc01g107980.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 95363460-95363959 Solanum lycopersicum
Solyc01g107980.2 0.5kb downstream 0.5kb downstream 2061 true SL2.50ch01: 95361399-95363459 Solanum lycopersicum
Solyc01g107980.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 95361399-95361898 Solanum lycopersicum
Solyc01g107980.2 1.0kb upstream 1.0kb upstream 2561 true SL2.50ch01: 95361899-95364459 Solanum lycopersicum
Solyc01g107980.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 95363460-95364459 Solanum lycopersicum
Solyc01g107980.2 1.0kb downstream 1.0kb downstream 2561 true SL2.50ch01: 95360899-95363459 Solanum lycopersicum
Solyc01g107980.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 95360899-95361898 Solanum lycopersicum
Solyc01g107980.2 2.0kb upstream 2.0kb upstream 3561 true SL2.50ch01: 95361899-95365459 Solanum lycopersicum
Solyc01g107980.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 95363460-95365459 Solanum lycopersicum
Solyc01g107980.2 2.0kb downstream 2.0kb downstream 3561 true SL2.50ch01: 95359899-95363459 Solanum lycopersicum
Solyc01g107980.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 95359899-95361898 Solanum lycopersicum
Solyc01g107980.2 5.0kb upstream 5.0kb upstream 6561 true SL2.50ch01: 95361899-95368459 Solanum lycopersicum
Solyc01g107980.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 95363460-95368459 Solanum lycopersicum
Solyc01g107980.2 5.0kb downstream 5.0kb downstream 6561 true SL2.50ch01: 95356899-95363459 Solanum lycopersicum
Solyc01g107980.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 95356899-95361898 Solanum lycopersicum
Solyc01g107980.2 10.0kb upstream 10.0kb upstream 11561 true SL2.50ch01: 95361899-95373459 Solanum lycopersicum
Solyc01g107980.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 95363460-95373459 Solanum lycopersicum
Solyc01g107980.2 10.0kb downstream 10.0kb downstream 11561 true SL2.50ch01: 95351899-95363459 Solanum lycopersicum
Solyc01g107980.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 95351899-95361898 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480674 5263 Asterids View MSA
123740066 5271 Pentapetalae View MSA
122793707 5272 Eudicot View MSA
122045522 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain