Gene : Solyc01g106740.2 S. lycopersicum ITAG2.4
Defline:  (1 of 2) 6.1.1.12 - Aspartate--tRNA ligase / Aspartyl-tRNA synthetase Description:  Aspartyl-tRNA synthetase (AHRD V1 **** D8FUD3_9CYAN); contains Interpro domain(s) IPR004524 Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type
Genomic Order:  3724 Name:  ? Solyc01g106740.2
Secondary Identifier:  ? PAC:36140676
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Slycopersicum TRNA-CHARGING-PWY Solanum lycopersicum pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g106740.2 0.5kb upstream 0.5kb upstream 12066 true SL2.50ch01: 94478159-94490224 Solanum lycopersicum
Solyc01g106740.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 94489725-94490224 Solanum lycopersicum
Solyc01g106740.2 0.5kb downstream 0.5kb downstream 12066 true SL2.50ch01: 94477659-94489724 Solanum lycopersicum
Solyc01g106740.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 94477659-94478158 Solanum lycopersicum
Solyc01g106740.2 1.0kb upstream 1.0kb upstream 12566 true SL2.50ch01: 94478159-94490724 Solanum lycopersicum
Solyc01g106740.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 94489725-94490724 Solanum lycopersicum
Solyc01g106740.2 1.0kb downstream 1.0kb downstream 12566 true SL2.50ch01: 94477159-94489724 Solanum lycopersicum
Solyc01g106740.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 94477159-94478158 Solanum lycopersicum
Solyc01g106740.2 2.0kb upstream 2.0kb upstream 13566 true SL2.50ch01: 94478159-94491724 Solanum lycopersicum
Solyc01g106740.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 94489725-94491724 Solanum lycopersicum
Solyc01g106740.2 2.0kb downstream 2.0kb downstream 13566 true SL2.50ch01: 94476159-94489724 Solanum lycopersicum
Solyc01g106740.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 94476159-94478158 Solanum lycopersicum
Solyc01g106740.2 5.0kb upstream 5.0kb upstream 16566 true SL2.50ch01: 94478159-94494724 Solanum lycopersicum
Solyc01g106740.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 94489725-94494724 Solanum lycopersicum
Solyc01g106740.2 5.0kb downstream 5.0kb downstream 16566 true SL2.50ch01: 94473159-94489724 Solanum lycopersicum
Solyc01g106740.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 94473159-94478158 Solanum lycopersicum
Solyc01g106740.2 10.0kb upstream 10.0kb upstream 21566 true SL2.50ch01: 94478159-94499724 Solanum lycopersicum
Solyc01g106740.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 94489725-94499724 Solanum lycopersicum
Solyc01g106740.2 10.0kb downstream 10.0kb downstream 21566 true SL2.50ch01: 94468159-94489724 Solanum lycopersicum
Solyc01g106740.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 94468159-94478158 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121473747 5263 Asterids View MSA
123742204 5271 Pentapetalae View MSA
122792299 5272 Eudicot View MSA
122041718 5273 Angiosperm View MSA
121346039 5274 Embryophyte View MSA
123424871 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain