Gene : Solyc01g108180.2 S. lycopersicum ITAG2.4
Defline:  (1 of 6) PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase) Description:  Pentatricopeptide repeat-containing protein (AHRD V1 ***- D7MA46_ARALY); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  3867 Name:  ? Solyc01g108180.2
Secondary Identifier:  ? PAC:36140226
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc01g108180.2 0.5kb upstream 0.5kb upstream 2710 true SL2.50ch01: 95550087-95552796 Solanum lycopersicum
Solyc01g108180.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch01: 95550087-95550586 Solanum lycopersicum
Solyc01g108180.2 0.5kb downstream 0.5kb downstream 2710 true SL2.50ch01: 95550587-95553296 Solanum lycopersicum
Solyc01g108180.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch01: 95552797-95553296 Solanum lycopersicum
Solyc01g108180.2 1.0kb upstream 1.0kb upstream 3210 true SL2.50ch01: 95549587-95552796 Solanum lycopersicum
Solyc01g108180.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch01: 95549587-95550586 Solanum lycopersicum
Solyc01g108180.2 1.0kb downstream 1.0kb downstream 3210 true SL2.50ch01: 95550587-95553796 Solanum lycopersicum
Solyc01g108180.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch01: 95552797-95553796 Solanum lycopersicum
Solyc01g108180.2 2.0kb upstream 2.0kb upstream 4210 true SL2.50ch01: 95548587-95552796 Solanum lycopersicum
Solyc01g108180.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch01: 95548587-95550586 Solanum lycopersicum
Solyc01g108180.2 2.0kb downstream 2.0kb downstream 4210 true SL2.50ch01: 95550587-95554796 Solanum lycopersicum
Solyc01g108180.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch01: 95552797-95554796 Solanum lycopersicum
Solyc01g108180.2 5.0kb upstream 5.0kb upstream 7210 true SL2.50ch01: 95545587-95552796 Solanum lycopersicum
Solyc01g108180.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch01: 95545587-95550586 Solanum lycopersicum
Solyc01g108180.2 5.0kb downstream 5.0kb downstream 7210 true SL2.50ch01: 95550587-95557796 Solanum lycopersicum
Solyc01g108180.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch01: 95552797-95557796 Solanum lycopersicum
Solyc01g108180.2 10.0kb upstream 10.0kb upstream 12210 true SL2.50ch01: 95540587-95552796 Solanum lycopersicum
Solyc01g108180.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch01: 95540587-95550586 Solanum lycopersicum
Solyc01g108180.2 10.0kb downstream 10.0kb downstream 12210 true SL2.50ch01: 95550587-95562796 Solanum lycopersicum
Solyc01g108180.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch01: 95552797-95562796 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480500 5263 Asterids View MSA
123750280 5271 Pentapetalae View MSA
122796437 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

0 Rna Seq Expressions

0 Strain