Gene : Solyc10g078540.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) K11128 - H/ACA ribonucleoprotein complex subunit 1 (GAR1, NOLA1) Description:  H/ACA ribonucleoprotein complex subunit 1-like protein 1 (AHRD V1 *-*- B6TYV7_MAIZE); contains Interpro domain(s) IPR007504 Gar1 protein RNA-binding region
Genomic Order:  1823 Name:  ? Solyc10g078540.1
Secondary Identifier:  ? PAC:36154347
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc10g078540.1 0.5kb upstream 0.5kb upstream 2308 true SL2.50ch10: 60337786-60340093 Solanum lycopersicum
Solyc10g078540.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch10: 60337786-60338285 Solanum lycopersicum
Solyc10g078540.1 0.5kb downstream 0.5kb downstream 2308 true SL2.50ch10: 60338286-60340593 Solanum lycopersicum
Solyc10g078540.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch10: 60340094-60340593 Solanum lycopersicum
Solyc10g078540.1 1.0kb upstream 1.0kb upstream 2808 true SL2.50ch10: 60337286-60340093 Solanum lycopersicum
Solyc10g078540.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch10: 60337286-60338285 Solanum lycopersicum
Solyc10g078540.1 1.0kb downstream 1.0kb downstream 2808 true SL2.50ch10: 60338286-60341093 Solanum lycopersicum
Solyc10g078540.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch10: 60340094-60341093 Solanum lycopersicum
Solyc10g078540.1 2.0kb upstream 2.0kb upstream 3808 true SL2.50ch10: 60336286-60340093 Solanum lycopersicum
Solyc10g078540.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch10: 60336286-60338285 Solanum lycopersicum
Solyc10g078540.1 2.0kb downstream 2.0kb downstream 3808 true SL2.50ch10: 60338286-60342093 Solanum lycopersicum
Solyc10g078540.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch10: 60340094-60342093 Solanum lycopersicum
Solyc10g078540.1 5.0kb upstream 5.0kb upstream 6808 true SL2.50ch10: 60333286-60340093 Solanum lycopersicum
Solyc10g078540.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch10: 60333286-60338285 Solanum lycopersicum
Solyc10g078540.1 5.0kb downstream 5.0kb downstream 6808 true SL2.50ch10: 60338286-60345093 Solanum lycopersicum
Solyc10g078540.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch10: 60340094-60345093 Solanum lycopersicum
Solyc10g078540.1 10.0kb upstream 10.0kb upstream 11808 true SL2.50ch10: 60328286-60340093 Solanum lycopersicum
Solyc10g078540.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch10: 60328286-60338285 Solanum lycopersicum
Solyc10g078540.1 10.0kb downstream 10.0kb downstream 11808 true SL2.50ch10: 60338286-60350093 Solanum lycopersicum
Solyc10g078540.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch10: 60340094-60350093 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121479813 5263 Asterids View MSA
123746440 5271 Pentapetalae View MSA
122789002 5272 Eudicot View MSA
122045887 5273 Angiosperm View MSA
121346687 5274 Embryophyte View MSA
123425060 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain