Gene : Solyc04g054270.2 S. lycopersicum ITAG2.4
Defline:  (1 of 47) PF01535//PF13041//PF13812 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Description:  Pentatricopeptide repeat protein 5 (AHRD V1 ***- A7LN87_MAIZE); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
Genomic Order:  1484 Name:  ? Solyc04g054270.2
Secondary Identifier:  ? PAC:36143890
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g054270.2 0.5kb upstream 0.5kb upstream 3144 true SL2.50ch04: 52262758-52265901 Solanum lycopersicum
Solyc04g054270.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 52262758-52263257 Solanum lycopersicum
Solyc04g054270.2 0.5kb downstream 0.5kb downstream 3144 true SL2.50ch04: 52263258-52266401 Solanum lycopersicum
Solyc04g054270.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 52265902-52266401 Solanum lycopersicum
Solyc04g054270.2 1.0kb upstream 1.0kb upstream 3644 true SL2.50ch04: 52262258-52265901 Solanum lycopersicum
Solyc04g054270.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 52262258-52263257 Solanum lycopersicum
Solyc04g054270.2 1.0kb downstream 1.0kb downstream 3644 true SL2.50ch04: 52263258-52266901 Solanum lycopersicum
Solyc04g054270.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 52265902-52266901 Solanum lycopersicum
Solyc04g054270.2 2.0kb upstream 2.0kb upstream 4644 true SL2.50ch04: 52261258-52265901 Solanum lycopersicum
Solyc04g054270.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 52261258-52263257 Solanum lycopersicum
Solyc04g054270.2 2.0kb downstream 2.0kb downstream 4644 true SL2.50ch04: 52263258-52267901 Solanum lycopersicum
Solyc04g054270.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 52265902-52267901 Solanum lycopersicum
Solyc04g054270.2 5.0kb upstream 5.0kb upstream 7644 true SL2.50ch04: 52258258-52265901 Solanum lycopersicum
Solyc04g054270.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 52258258-52263257 Solanum lycopersicum
Solyc04g054270.2 5.0kb downstream 5.0kb downstream 7644 true SL2.50ch04: 52263258-52270901 Solanum lycopersicum
Solyc04g054270.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 52265902-52270901 Solanum lycopersicum
Solyc04g054270.2 10.0kb upstream 10.0kb upstream 12644 true SL2.50ch04: 52253258-52265901 Solanum lycopersicum
Solyc04g054270.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 52253258-52263257 Solanum lycopersicum
Solyc04g054270.2 10.0kb downstream 10.0kb downstream 12644 true SL2.50ch04: 52263258-52275901 Solanum lycopersicum
Solyc04g054270.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 52265902-52275901 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121469857 5263 Asterids View MSA
123738247 5271 Pentapetalae View MSA
122787727 5272 Eudicot View MSA
122046290 5273 Angiosperm View MSA
121345474 5274 Embryophyte View MSA
123380225 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain