Gene : Solyc12g011340.1 S. lycopersicum ITAG2.4
Defline:  (1 of 1) KOG0106//KOG0131 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 Description:  Polyadenylate-binding protein (AHRD V1 *-*- D3TN92_GLOMM); contains Interpro domain(s) IPR000504 RNA recognition motif, RNP-1
Genomic Order:  535 Name:  ? Solyc12g011340.1
Secondary Identifier:  ? PAC:36148859
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g011340.1 0.5kb upstream 0.5kb upstream 7597 true SL2.50ch12: 4182846-4190442 Solanum lycopersicum
Solyc12g011340.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 4182846-4183345 Solanum lycopersicum
Solyc12g011340.1 0.5kb downstream 0.5kb downstream 7597 true SL2.50ch12: 4183346-4190942 Solanum lycopersicum
Solyc12g011340.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 4190443-4190942 Solanum lycopersicum
Solyc12g011340.1 1.0kb upstream 1.0kb upstream 8097 true SL2.50ch12: 4182346-4190442 Solanum lycopersicum
Solyc12g011340.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 4182346-4183345 Solanum lycopersicum
Solyc12g011340.1 1.0kb downstream 1.0kb downstream 8097 true SL2.50ch12: 4183346-4191442 Solanum lycopersicum
Solyc12g011340.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 4190443-4191442 Solanum lycopersicum
Solyc12g011340.1 2.0kb upstream 2.0kb upstream 9097 true SL2.50ch12: 4181346-4190442 Solanum lycopersicum
Solyc12g011340.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 4181346-4183345 Solanum lycopersicum
Solyc12g011340.1 2.0kb downstream 2.0kb downstream 9097 true SL2.50ch12: 4183346-4192442 Solanum lycopersicum
Solyc12g011340.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 4190443-4192442 Solanum lycopersicum
Solyc12g011340.1 5.0kb upstream 5.0kb upstream 12097 true SL2.50ch12: 4178346-4190442 Solanum lycopersicum
Solyc12g011340.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 4178346-4183345 Solanum lycopersicum
Solyc12g011340.1 5.0kb downstream 5.0kb downstream 12097 true SL2.50ch12: 4183346-4195442 Solanum lycopersicum
Solyc12g011340.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 4190443-4195442 Solanum lycopersicum
Solyc12g011340.1 10.0kb upstream 10.0kb upstream 17097 true SL2.50ch12: 4173346-4190442 Solanum lycopersicum
Solyc12g011340.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 4173346-4183345 Solanum lycopersicum
Solyc12g011340.1 10.0kb downstream 10.0kb downstream 17097 true SL2.50ch12: 4183346-4200442 Solanum lycopersicum
Solyc12g011340.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 4190443-4200442 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480633 5263 Asterids View MSA
123740266 5271 Pentapetalae View MSA
122794524 5272 Eudicot View MSA
122049515 5273 Angiosperm View MSA
121344395 5274 Embryophyte View MSA
123428747 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain