Gene : Solyc12g005340.1 S. lycopersicum ITAG2.4
Defline:  (1 of 54) PF03514 - GRAS domain family (GRAS) Description:  GRAS family transcription factor (AHRD V1 **-- B9I7E1_POPTR); contains Interpro domain(s) IPR005202 GRAS transcription factor
Genomic Order:  35 Name:  ? Solyc12g005340.1
Secondary Identifier:  ? PAC:36148200
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g005340.1 0.5kb upstream 0.5kb upstream 2177 true SL2.50ch12: 211757-213933 Solanum lycopersicum
Solyc12g005340.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 213434-213933 Solanum lycopersicum
Solyc12g005340.1 0.5kb downstream 0.5kb downstream 2177 true SL2.50ch12: 211257-213433 Solanum lycopersicum
Solyc12g005340.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 211257-211756 Solanum lycopersicum
Solyc12g005340.1 1.0kb upstream 1.0kb upstream 2677 true SL2.50ch12: 211757-214433 Solanum lycopersicum
Solyc12g005340.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 213434-214433 Solanum lycopersicum
Solyc12g005340.1 1.0kb downstream 1.0kb downstream 2677 true SL2.50ch12: 210757-213433 Solanum lycopersicum
Solyc12g005340.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 210757-211756 Solanum lycopersicum
Solyc12g005340.1 2.0kb upstream 2.0kb upstream 3677 true SL2.50ch12: 211757-215433 Solanum lycopersicum
Solyc12g005340.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 213434-215433 Solanum lycopersicum
Solyc12g005340.1 2.0kb downstream 2.0kb downstream 3677 true SL2.50ch12: 209757-213433 Solanum lycopersicum
Solyc12g005340.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 209757-211756 Solanum lycopersicum
Solyc12g005340.1 5.0kb upstream 5.0kb upstream 6677 true SL2.50ch12: 211757-218433 Solanum lycopersicum
Solyc12g005340.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 213434-218433 Solanum lycopersicum
Solyc12g005340.1 5.0kb downstream 5.0kb downstream 6677 true SL2.50ch12: 206757-213433 Solanum lycopersicum
Solyc12g005340.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 206757-211756 Solanum lycopersicum
Solyc12g005340.1 10.0kb upstream 10.0kb upstream 11677 true SL2.50ch12: 211757-223433 Solanum lycopersicum
Solyc12g005340.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 213434-223433 Solanum lycopersicum
Solyc12g005340.1 10.0kb downstream 10.0kb downstream 11677 true SL2.50ch12: 201757-213433 Solanum lycopersicum
Solyc12g005340.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 201757-211756 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121480278 5263 Asterids View MSA
123743209 5271 Pentapetalae View MSA
122794651 5272 Eudicot View MSA
122048977 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain