Gene : Solyc12g005870.1 S. lycopersicum ITAG2.4
Defline:  (1 of 2) K04532 - amyloid beta precursor protein binding protein 1 (APPBP1) Description:  NEDD8 activating enzyme E1 subunit 1 (AHRD V1 ***- A1L122_RAT); contains Interpro domain(s) IPR009036 Molybdenum cofactor biosynthesis, MoeB
Genomic Order:  88 Name:  ? Solyc12g005870.1
Secondary Identifier:  ? PAC:36146605
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g005870.1 0.5kb upstream 0.5kb upstream 11529 true SL2.50ch12: 499578-511106 Solanum lycopersicum
Solyc12g005870.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 499578-500077 Solanum lycopersicum
Solyc12g005870.1 0.5kb downstream 0.5kb downstream 11529 true SL2.50ch12: 500078-511606 Solanum lycopersicum
Solyc12g005870.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 511107-511606 Solanum lycopersicum
Solyc12g005870.1 1.0kb upstream 1.0kb upstream 12029 true SL2.50ch12: 499078-511106 Solanum lycopersicum
Solyc12g005870.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 499078-500077 Solanum lycopersicum
Solyc12g005870.1 1.0kb downstream 1.0kb downstream 12029 true SL2.50ch12: 500078-512106 Solanum lycopersicum
Solyc12g005870.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 511107-512106 Solanum lycopersicum
Solyc12g005870.1 2.0kb upstream 2.0kb upstream 13029 true SL2.50ch12: 498078-511106 Solanum lycopersicum
Solyc12g005870.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 498078-500077 Solanum lycopersicum
Solyc12g005870.1 2.0kb downstream 2.0kb downstream 13029 true SL2.50ch12: 500078-513106 Solanum lycopersicum
Solyc12g005870.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 511107-513106 Solanum lycopersicum
Solyc12g005870.1 5.0kb upstream 5.0kb upstream 16029 true SL2.50ch12: 495078-511106 Solanum lycopersicum
Solyc12g005870.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 495078-500077 Solanum lycopersicum
Solyc12g005870.1 5.0kb downstream 5.0kb downstream 16029 true SL2.50ch12: 500078-516106 Solanum lycopersicum
Solyc12g005870.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 511107-516106 Solanum lycopersicum
Solyc12g005870.1 10.0kb upstream 10.0kb upstream 21029 true SL2.50ch12: 490078-511106 Solanum lycopersicum
Solyc12g005870.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 490078-500077 Solanum lycopersicum
Solyc12g005870.1 10.0kb downstream 10.0kb downstream 21029 true SL2.50ch12: 500078-521106 Solanum lycopersicum
Solyc12g005870.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 511107-521106 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041299 5273 Angiosperm View MSA
121371744 5263 Asterids Singleton cluster - no MSA
123740431 5271 Pentapetalae View MSA
122791282 5272 Eudicot View MSA
121347842 5274 Embryophyte View MSA
123426326 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain