Gene : Solyc12g009210.1 S. lycopersicum ITAG2.4
Defline:  (1 of 34) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Description:  Polygalacturonase (AHRD V1 **-- B6SZN5_MAIZE); contains Interpro domain(s) IPR012334 Pectin lyase fold
Genomic Order:  322 Name:  ? Solyc12g009210.1
Secondary Identifier:  ? PAC:36147457
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g009210.1 0.5kb upstream 0.5kb upstream 6608 true SL2.50ch12: 2490235-2496842 Solanum lycopersicum
Solyc12g009210.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 2490235-2490734 Solanum lycopersicum
Solyc12g009210.1 0.5kb downstream 0.5kb downstream 6608 true SL2.50ch12: 2490735-2497342 Solanum lycopersicum
Solyc12g009210.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 2496843-2497342 Solanum lycopersicum
Solyc12g009210.1 1.0kb upstream 1.0kb upstream 7108 true SL2.50ch12: 2489735-2496842 Solanum lycopersicum
Solyc12g009210.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 2489735-2490734 Solanum lycopersicum
Solyc12g009210.1 1.0kb downstream 1.0kb downstream 7108 true SL2.50ch12: 2490735-2497842 Solanum lycopersicum
Solyc12g009210.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 2496843-2497842 Solanum lycopersicum
Solyc12g009210.1 2.0kb upstream 2.0kb upstream 8108 true SL2.50ch12: 2488735-2496842 Solanum lycopersicum
Solyc12g009210.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 2488735-2490734 Solanum lycopersicum
Solyc12g009210.1 2.0kb downstream 2.0kb downstream 8108 true SL2.50ch12: 2490735-2498842 Solanum lycopersicum
Solyc12g009210.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 2496843-2498842 Solanum lycopersicum
Solyc12g009210.1 5.0kb upstream 5.0kb upstream 11108 true SL2.50ch12: 2485735-2496842 Solanum lycopersicum
Solyc12g009210.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 2485735-2490734 Solanum lycopersicum
Solyc12g009210.1 5.0kb downstream 5.0kb downstream 11108 true SL2.50ch12: 2490735-2501842 Solanum lycopersicum
Solyc12g009210.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 2496843-2501842 Solanum lycopersicum
Solyc12g009210.1 10.0kb upstream 10.0kb upstream 16108 true SL2.50ch12: 2480735-2496842 Solanum lycopersicum
Solyc12g009210.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 2480735-2490734 Solanum lycopersicum
Solyc12g009210.1 10.0kb downstream 10.0kb downstream 16108 true SL2.50ch12: 2490735-2506842 Solanum lycopersicum
Solyc12g009210.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 2496843-2506842 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
121480196 5263 Asterids View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain