Gene : Solyc04g080800.2 S. lycopersicum ITAG2.4
Defline:  (1 of 1) 2.1.1.198 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Description:  Ribosomal RNA small subunit methyltransferase I (AHRD V1 ***- RSMI_SYNY3); contains Interpro domain(s) IPR008189 Uncharacterised protein family UPF0011
Genomic Order:  2522 Name:  ? Solyc04g080800.2
Secondary Identifier:  ? PAC:36143610
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc04g080800.2 0.5kb upstream 0.5kb upstream 6001 true SL2.50ch04: 64879673-64885673 Solanum lycopersicum
Solyc04g080800.2 0.5kb upstream 0.5kb upstream 500 false SL2.50ch04: 64885174-64885673 Solanum lycopersicum
Solyc04g080800.2 0.5kb downstream 0.5kb downstream 6001 true SL2.50ch04: 64879173-64885173 Solanum lycopersicum
Solyc04g080800.2 0.5kb downstream 0.5kb downstream 500 false SL2.50ch04: 64879173-64879672 Solanum lycopersicum
Solyc04g080800.2 1.0kb upstream 1.0kb upstream 6501 true SL2.50ch04: 64879673-64886173 Solanum lycopersicum
Solyc04g080800.2 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch04: 64885174-64886173 Solanum lycopersicum
Solyc04g080800.2 1.0kb downstream 1.0kb downstream 6501 true SL2.50ch04: 64878673-64885173 Solanum lycopersicum
Solyc04g080800.2 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch04: 64878673-64879672 Solanum lycopersicum
Solyc04g080800.2 2.0kb upstream 2.0kb upstream 7501 true SL2.50ch04: 64879673-64887173 Solanum lycopersicum
Solyc04g080800.2 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch04: 64885174-64887173 Solanum lycopersicum
Solyc04g080800.2 2.0kb downstream 2.0kb downstream 7501 true SL2.50ch04: 64877673-64885173 Solanum lycopersicum
Solyc04g080800.2 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch04: 64877673-64879672 Solanum lycopersicum
Solyc04g080800.2 5.0kb upstream 5.0kb upstream 10501 true SL2.50ch04: 64879673-64890173 Solanum lycopersicum
Solyc04g080800.2 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch04: 64885174-64890173 Solanum lycopersicum
Solyc04g080800.2 5.0kb downstream 5.0kb downstream 10501 true SL2.50ch04: 64874673-64885173 Solanum lycopersicum
Solyc04g080800.2 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch04: 64874673-64879672 Solanum lycopersicum
Solyc04g080800.2 10.0kb upstream 10.0kb upstream 15501 true SL2.50ch04: 64879673-64895173 Solanum lycopersicum
Solyc04g080800.2 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch04: 64885174-64895173 Solanum lycopersicum
Solyc04g080800.2 10.0kb downstream 10.0kb downstream 15501 true SL2.50ch04: 64869673-64885173 Solanum lycopersicum
Solyc04g080800.2 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch04: 64869673-64879672 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121475436 5263 Asterids View MSA
123741052 5271 Pentapetalae View MSA
122786797 5272 Eudicot View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain