Gene : Solyc12g042060.1 S. lycopersicum ITAG2.4
Defline:  (1 of 3) K03696 - ATP-dependent Clp protease ATP-binding subunit ClpC (clpC) Description:  ATP-dependent clp protease ATP-binding subunit (AHRD V1 **-- Q85G08_CYAME); contains Interpro domain(s) IPR013093 ATPase associated with various cellular activities, AAA-2
Genomic Order:  1380 Name:  ? Solyc12g042060.1
Secondary Identifier:  ? PAC:36148864
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Ontology Annotation Displayer

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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Solyc12g042060.1 0.5kb upstream 0.5kb upstream 4928 true SL2.50ch12: 40789176-40794103 Solanum lycopersicum
Solyc12g042060.1 0.5kb upstream 0.5kb upstream 500 false SL2.50ch12: 40793604-40794103 Solanum lycopersicum
Solyc12g042060.1 0.5kb downstream 0.5kb downstream 4928 true SL2.50ch12: 40788676-40793603 Solanum lycopersicum
Solyc12g042060.1 0.5kb downstream 0.5kb downstream 500 false SL2.50ch12: 40788676-40789175 Solanum lycopersicum
Solyc12g042060.1 1.0kb upstream 1.0kb upstream 5428 true SL2.50ch12: 40789176-40794603 Solanum lycopersicum
Solyc12g042060.1 1.0kb upstream 1.0kb upstream 1000 false SL2.50ch12: 40793604-40794603 Solanum lycopersicum
Solyc12g042060.1 1.0kb downstream 1.0kb downstream 5428 true SL2.50ch12: 40788176-40793603 Solanum lycopersicum
Solyc12g042060.1 1.0kb downstream 1.0kb downstream 1000 false SL2.50ch12: 40788176-40789175 Solanum lycopersicum
Solyc12g042060.1 2.0kb upstream 2.0kb upstream 6428 true SL2.50ch12: 40789176-40795603 Solanum lycopersicum
Solyc12g042060.1 2.0kb upstream 2.0kb upstream 2000 false SL2.50ch12: 40793604-40795603 Solanum lycopersicum
Solyc12g042060.1 2.0kb downstream 2.0kb downstream 6428 true SL2.50ch12: 40787176-40793603 Solanum lycopersicum
Solyc12g042060.1 2.0kb downstream 2.0kb downstream 2000 false SL2.50ch12: 40787176-40789175 Solanum lycopersicum
Solyc12g042060.1 5.0kb upstream 5.0kb upstream 9428 true SL2.50ch12: 40789176-40798603 Solanum lycopersicum
Solyc12g042060.1 5.0kb upstream 5.0kb upstream 5000 false SL2.50ch12: 40793604-40798603 Solanum lycopersicum
Solyc12g042060.1 5.0kb downstream 5.0kb downstream 9428 true SL2.50ch12: 40784176-40793603 Solanum lycopersicum
Solyc12g042060.1 5.0kb downstream 5.0kb downstream 5000 false SL2.50ch12: 40784176-40789175 Solanum lycopersicum
Solyc12g042060.1 10.0kb upstream 10.0kb upstream 14428 true SL2.50ch12: 40789176-40803603 Solanum lycopersicum
Solyc12g042060.1 10.0kb upstream 10.0kb upstream 10000 false SL2.50ch12: 40793604-40803603 Solanum lycopersicum
Solyc12g042060.1 10.0kb downstream 10.0kb downstream 14428 true SL2.50ch12: 40779176-40793603 Solanum lycopersicum
Solyc12g042060.1 10.0kb downstream 10.0kb downstream 10000 false SL2.50ch12: 40779176-40789175 Solanum lycopersicum

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121478623 5263 Asterids View MSA
123738110 5271 Pentapetalae View MSA
122796801 5272 Eudicot View MSA
122047694 5273 Angiosperm View MSA
121345923 5274 Embryophyte View MSA
123426532 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain